View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0882_low_13 (Length: 315)
Name: NF0882_low_13
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0882_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 88 - 300
Target Start/End: Complemental strand, 27448807 - 27448592
Alignment:
| Q |
88 |
catcatcattgaaggactatgttataattaggaacgtccct---ttctattaattatggtttgggcggcacagcaaaattatttcatatatatataacaa |
184 |
Q |
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| T |
27448807 |
catcatcattgaaggactatgttataattaggaacgtccctactttctgttaattatggtttgggcggaacagcaaaattatttcatatatatataacaa |
27448708 |
T |
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| Q |
185 |
ttagaaaacttatctaaaaatatatgcaattcttgtttacagaaaaatttcacaaacatgggagaaggagtctgaacagcctgaagaagatggtcatcag |
284 |
Q |
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| T |
27448707 |
ttagaaaacttatctaaaaatatatgcaattcttgtttacagaaaaatttcacaaacatgggagaaggagtctgaacagcctgaagaagatggtcatcag |
27448608 |
T |
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| Q |
285 |
tggagaaagtatggcc |
300 |
Q |
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|||||||||||||||| |
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| T |
27448607 |
tggagaaagtatggcc |
27448592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 27430702 - 27430628
Alignment:
| Q |
224 |
cagaaaaatttcacaaacatgggagaaggagtctgaacagcctgaagaagatggtcatcagtggagaaagtatgg |
298 |
Q |
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||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| |
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| T |
27430702 |
cagaaaagtttcacaaacatgggagaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgg |
27430628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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