View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0882_low_19 (Length: 262)
Name: NF0882_low_19
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0882_low_19 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32953478 - 32953587
Alignment:
| Q |
1 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttagtgag-nnnnnnnngttggaattttgagtttgagtttgtctct |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
32953478 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttagtgagaaaaaaaaagttggaattttgagtttgagtttgtcttt |
32953577 |
T |
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| Q |
100 |
gtgtgaatat |
109 |
Q |
| |
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||| |||||| |
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| T |
32953578 |
gtgcgaatat |
32953587 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 3722698 - 3722647
Alignment:
| Q |
7 |
taattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttag |
58 |
Q |
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||||||||| |||||| |||||||||||||||||||| |||||||||||||| |
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| T |
3722698 |
taattttggtgttgttatgtaagtgtgtaacatagataaaatgagattttag |
3722647 |
T |
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Target: scaffold0011 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 229074 - 229017
Alignment:
| Q |
1 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttag |
58 |
Q |
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| T |
229074 |
ctctcttaattttggcattgttgtgtaagtgtgtaacatagatgaaatgagattttag |
229017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 27983824 - 27983712
Alignment:
| Q |
1 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttagtgagnnnnnnnngttggaattttgagtttgagtttgtctctg |
100 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||| ||||| || |
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| T |
27983824 |
ctctcttaattttggtgttgttgtataagtgtgtaacatagatgaaatgagattttagagagaaaaaaaagttggaactttgag-ttgagtgtgtctttg |
27983726 |
T |
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| Q |
101 |
tgtgaatattgttg |
114 |
Q |
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||||||||| |||| |
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| T |
27983725 |
tgtgaatatggttg |
27983712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41968860 - 41968900
Alignment:
| Q |
1 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatag |
41 |
Q |
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| T |
41968860 |
ctctcttaattttggtgttgttatgtaagtatgtaacatag |
41968900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37081004 - 37080948
Alignment:
| Q |
1 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagatttta |
57 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37081004 |
ctctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagatttta |
37080948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36033558 - 36033614
Alignment:
| Q |
1 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttag |
58 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36033558 |
ctctcttaattttggtgttgttgtgtaagtgtgtaacatagatg-aatgagattttag |
36033614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 7805814 - 7805763
Alignment:
| Q |
6 |
ttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagatttta |
57 |
Q |
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|||||||||| ||||||||| |||||||| |||||||||||||||||||||| |
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| T |
7805814 |
ttaattttggtgttgttgtgcaagtgtgtgacatagatgaaatgagatttta |
7805763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1236000 - 1236057
Alignment:
| Q |
1 |
ctctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttag |
58 |
Q |
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||||||||||||| | |||||| ||||||||||||||||| || |||||||||||||| |
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| T |
1236000 |
ctctcttaatttttgtgttgttatgtaagtgtgtaacatatataaaatgagattttag |
1236057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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