View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0882_low_22 (Length: 248)

Name: NF0882_low_22
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0882_low_22
NF0882_low_22
[»] chr4 (6 HSPs)
chr4 (88-221)||(23054224-23054357)
chr4 (88-221)||(47518441-47518575)
chr4 (92-221)||(53202268-53202398)
chr4 (111-220)||(6410012-6410122)
chr4 (88-172)||(34227058-34227142)
chr4 (88-152)||(12469342-12469406)
[»] chr5 (7 HSPs)
chr5 (88-221)||(18696931-18697065)
chr5 (92-221)||(7766995-7767125)
chr5 (90-216)||(27170084-27170211)
chr5 (88-148)||(7271832-7271892)
chr5 (88-155)||(6030388-6030455)
chr5 (111-187)||(41355548-41355624)
chr5 (88-153)||(38958230-38958295)
[»] chr2 (7 HSPs)
chr2 (88-221)||(17375275-17375409)
chr2 (88-221)||(17281934-17282069)
chr2 (88-221)||(1551588-1551722)
chr2 (93-221)||(1895413-1895542)
chr2 (88-155)||(34660284-34660351)
chr2 (88-187)||(3921590-3921689)
chr2 (88-155)||(4869643-4869710)
[»] chr6 (3 HSPs)
chr6 (88-218)||(21881465-21881596)
chr6 (88-221)||(20740576-20740710)
chr6 (92-166)||(30845559-30845633)
[»] chr8 (3 HSPs)
chr8 (90-221)||(10408825-10408957)
chr8 (95-187)||(5994635-5994727)
chr8 (88-172)||(6444033-6444117)
[»] chr1 (7 HSPs)
chr1 (89-221)||(34117971-34118104)
chr1 (88-187)||(34654976-34655075)
chr1 (88-187)||(26236677-26236776)
chr1 (111-187)||(39709023-39709099)
chr1 (88-155)||(615759-615826)
chr1 (111-221)||(11407975-11408086)
chr1 (98-166)||(14350994-14351062)
[»] chr7 (1 HSPs)
chr7 (92-221)||(3302577-3302707)
[»] chr3 (2 HSPs)
chr3 (92-155)||(18269763-18269826)
chr3 (88-162)||(43275977-43276051)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 23054357 - 23054224
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| | ||||||||||||    
T  23054357 tcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatcca 23054258  T
Q  188 acacaccatcgtgactgatccatcaccacctatg 221  Q
     |||||||||||||||||||||||||||||||||    
T  23054257 gcacaccatcgtgactgatccatcaccacctatg 23054224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 47518575 - 47518441
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||| ||||| ||||||| | |||||| ||||| ||| ||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||| ||    
T  47518575 tcagcaacaccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattca 47518476  T
Q  188 aca-caccatcgtgactgatccatcaccacctatg 221  Q
     || |||||| ||||||||||||||||||||||||    
T  47518475 tcaccaccattgtgactgatccatcaccacctatg 47518441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 53202268 - 53202398
Alignment:
Q  92 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca- 190  Q
    |||||||| |||||||   |||||| ||||| |||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||| || ||     
T  53202268 caccaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcac 53202367  T
Q  191 caccatcgtgactgatccatcaccacctatg 221  Q
    |||||||||||| ||||  ||||||||||||    
T  53202368 caccatcgtgaccgatctgtcaccacctatg 53202398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 6410012 - 6410122
Alignment:
Q  111 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaac-acaccatcgtgactgatcca 209  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||   |||| ||||| | |  |||| ||||||| ||||||    
T  6410012 atgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatcca 6410111  T
Q  210 tcaccacctat 220  Q
    |||||||||||    
T  6410112 tcaccacctat 6410122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 34227142 - 34227058
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaa 172  Q
    |||||||||||| |||| || | |||||| |||||  |||||||||||||||||| ||| |||||||||  ||||||||||||||    
T  34227142 tcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaa 34227058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 12469406 - 12469342
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaac 152  Q
    ||||||||||||||  |||| | |||||| ||||| ||||||||||||||| ||| |||||||||    
T  12469406 tcagcaccaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 18696931 - 18697065
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||||||||    
T  18696931 tcagcaacaccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatcca 18697030  T
Q  188 aca-caccatcgtgactgatccatcaccacctatg 221  Q
     || |||||||||||||||||||||||||||||||    
T  18697031 tcaccaccatcgtgactgatccatcaccacctatg 18697065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 7767125 - 7766995
Alignment:
Q  92 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca- 190  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||| ||| |||||||||||||| ||     
T  7767125 caccaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcac 7767026  T
Q  191 caccatcgtgactgatccatcaccacctatg 221  Q
    |||||| ||| | |||| |||||||||||||    
T  7767025 caccattgtggccgatcaatcaccacctatg 7766995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 27170211 - 27170084
Alignment:
Q  90 agcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaac 189  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||  || | | ||||||||||      
T  27170211 agcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccatt 27170112  T
Q  190 a-caccatcgtgactgatccatcaccac 216  Q
    | |||||||||||| |||||||||||||    
T  27170111 accaccatcgtgaccgatccatcaccac 27170084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 7271832 - 7271892
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcg 148  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  7271832 tcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 6030455 - 6030388
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 155  Q
    |||||||||||||||||||||  | |||||||||| ||||||||||||||||||| ||||||||||||    
T  6030455 tcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 41355624 - 41355548
Alignment:
Q  111 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||  ||||||| ||||||  |||||||||||||    
T  41355624 atgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatcca 41355548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 38958295 - 38958230
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaacc 153  Q
    ||||||||| ||  |||||| | |||||| | ||| ||||||||||||||||||| ||||||||||    
T  38958295 tcagcaccatcaaaaaaaccaccatgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 17375275 - 17375409
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    ||||||||||||||||||| |  |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  17375275 tcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatcca 17375374  T
Q  188 aca-caccatcgtgactgatccatcaccacctatg 221  Q
     || |||||||||||  ||||||||||||||||||    
T  17375375 tcaccaccatcgtgatcgatccatcaccacctatg 17375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 17282069 - 17281934
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaa-ccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcc 186  Q
    |||||||||||| ||||||| | |||||| ||||| || ||||||||||||||||| |||||||||||||  ||||||||||| || |||||||||||||    
T  17282069 tcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatcc 17281970  T
Q  187 aaca-caccatcgtgactgatccatcaccacctatg 221  Q
    | || |||||| ||||||||||||||||||||||||    
T  17281969 atcaccaccattgtgactgatccatcaccacctatg 17281934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 1551722 - 1551588
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    ||||||| |||| ||||||| | | |||| ||||| ||||||||||||||||||| ||||||||| |||  |||||||||||||| ||| | ||||||||    
T  1551722 tcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatcca 1551623  T
Q  188 aca-caccatcgtgactgatccatcaccacctatg 221  Q
     || |||||||||||||||||||||||||||||||    
T  1551622 tcaccaccatcgtgactgatccatcaccacctatg 1551588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 1895413 - 1895542
Alignment:
Q  93 accaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-c 191  Q
    ||||||| ||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||  || || |    
T  1895413 accaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcacc 1895512  T
Q  192 accatcgtgactgatccatcaccacctatg 221  Q
    |||||| |||| |||| |||||||||||||    
T  1895513 accatcatgaccgatcaatcaccacctatg 1895542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 34660284 - 34660351
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 155  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  34660284 tcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 3921590 - 3921689
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||||||||| ||||||| |  ||||| ||||| |||||||||||||||| || |||| ||||||||  ||||||||||||||  |||||||||||||    
T  3921590 tcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatcca 3921689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 4869643 - 4869710
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 155  Q
    ||||||||| |||||||||||| |||||||||| | |||||| |||||||||||| |||| |||||||    
T  4869643 tcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 21881465 - 21881596
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    ||||||||||||||| ||| || |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||||||||| ||||||||||||||    
T  21881465 tcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatcca 21881564  T
Q  188 aca-caccatcgtgactgatccatcaccacct 218  Q
     || |||||||||||| |||||||||||||||    
T  21881565 tcaccaccatcgtgaccgatccatcaccacct 21881596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 20740576 - 20740710
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||||||||| ||||||| | |||||| ||||  ||||||||||||||||||| |||||||||||||  ||||||||| |||| ||||||||||||||    
T  20740576 tcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatcca 20740675  T
Q  188 aca-caccatcgtgactgatccatcaccacctatg 221  Q
     || ||||||||||||  |||||||||||||||||    
T  20740676 tcaccaccatcgtgaccaatccatcaccacctatg 20740710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 30845559 - 30845633
Alignment:
Q  92 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcata 166  Q
    |||||||||| ||||| | | |||||||||  |||||||||||||||| || |||| ||||||||| || |||||    
T  30845559 caccaccatggaaaccaccacgaagcaccataaaccaacacaaccaaaaattcatcaaaaccataacagatcata 30845633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 10408825 - 10408957
Alignment:
Q  90 agcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaac 189  Q
    ||||||||||| |||||| | |||||||||||| ||||||||||||||||||| |||||||||||||| |  ||||||||||| |||||||||||||| |    
T  10408825 agcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatc 10408924  T
Q  190 a-caccatcgtgactgatccatcaccacctatg 221  Q
    | |||||||||||| | ||||||||||||||||    
T  10408925 accaccatcgtgaccgttccatcaccacctatg 10408957  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 5994635 - 5994727
Alignment:
Q  95 caccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||| | ||||||||||||    
T  5994635 caccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatcca 5994727  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 6444033 - 6444117
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaa 172  Q
    ||||| |||||||||||||| | | |||| ||||| ||||||||||| ||||||| | |||||||||||| || ||||| |||||    
T  6444033 tcagccccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaa 6444117  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 34117971 - 34118104
Alignment:
Q  89 cagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaa 188  Q
    |||||||||||||||||  || |||| ||||||| || |||||||||||||||| ||  |||||||||| |||||||||||||| ||||||||||||||     
T  34117971 cagcaccaccatgaaaaatgccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccat 34118070  T
Q  189 ca-caccatcgtgactgatccatcaccacctatg 221  Q
    || |||||||||||| ||||||||||||||||||    
T  34118071 caccaccatcgtgaccgatccatcaccacctatg 34118104  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 34654976 - 34655075
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| ||||||||| | |||||||||||| ||||||||||||||    
T  34654976 tcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatatgatcca 34655075  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 26236776 - 26236677
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    ||||||||| |||||||||| | |||||||||||| ||||||| ||||||||||| ||||||| |||||| || ||||||| ||| | |||| |||||||    
T  26236776 tcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctgatcca 26236677  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 39709099 - 39709023
Alignment:
Q  111 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 187  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||||||| | ||||| ||||||    
T  39709099 atgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatcca 39709023  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 615759 - 615826
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 155  Q
    |||||||||||||||||||||  |||||||||||| ||| ||||||||||||||| |||| |||||||    
T  615759 tcagcaccaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 11408086 - 11407975
Alignment:
Q  111 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-caccatcgtgactgatcca 209  Q
    |||||||||||| |||||||||||||||||||   |||||||||||| |  |||||||| || | | || ||||||| || |||| ||||| | ||||||    
T  11408086 atgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatcca 11407987  T
Q  210 tcaccacctatg 221  Q
    ||||||| ||||    
T  11407986 tcaccacttatg 11407975  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 14351062 - 14350994
Alignment:
Q  98 catgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcata 166  Q
    |||||||||| | | ||| |||||| |||||||||||| ||| || |||| |||||||||||| |||||    
T  14351062 catgaaaaccaccacgaaccaccacaaaccaacacaacaaaaaattcatcaaaaccataatagatcata 14350994  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 3302577 - 3302707
Alignment:
Q  92 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca- 190  Q
    ||||||||||||||| |  ||||||||||||  ||||| |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||  | ||     
T  3302577 caccaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcac 3302676  T
Q  191 caccatcgtgactgatccatcaccacctatg 221  Q
    |||||||||||  |||| |||||||||||||    
T  3302677 caccatcgtgatcgatctatcaccacctatg 3302707  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 18269826 - 18269763
Alignment:
Q  92 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 155  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||    
T  18269826 caccaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 43275977 - 43276051
Alignment:
Q  88 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagtt 162  Q
    ||||||||||||| ||||  |  |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||    
T  43275977 tcagcaccaccataaaaattgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaatcataacagtt 43276051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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