View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0882_low_3 (Length: 569)

Name: NF0882_low_3
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0882_low_3
NF0882_low_3
[»] chr3 (6 HSPs)
chr3 (11-336)||(9173409-9173749)
chr3 (205-477)||(9172181-9172430)
chr3 (227-293)||(23691618-23691684)
chr3 (227-293)||(23710057-23710123)
chr3 (227-293)||(23728513-23728579)
chr3 (227-293)||(23746969-23747035)
[»] chr2 (2 HSPs)
chr2 (14-175)||(2203607-2203768)
chr2 (214-316)||(2206190-2206292)
[»] chr7 (5 HSPs)
chr7 (14-175)||(15897257-15897418)
chr7 (205-296)||(31238850-31238941)
chr7 (213-311)||(8578566-8578664)
chr7 (287-341)||(31238941-31238995)
chr7 (216-296)||(15894718-15894798)
[»] chr5 (4 HSPs)
chr5 (14-175)||(18860714-18860875)
chr5 (237-296)||(34607123-34607182)
chr5 (214-316)||(18861707-18861809)
chr5 (226-296)||(2358601-2358671)
[»] chr1 (5 HSPs)
chr1 (14-157)||(24319779-24319922)
chr1 (215-296)||(29406841-29406922)
chr1 (222-296)||(44289380-44289454)
chr1 (222-295)||(27789319-27789392)
chr1 (266-315)||(45517340-45517389)
[»] chr6 (3 HSPs)
chr6 (206-341)||(28844792-28844927)
chr6 (127-176)||(28654247-28654296)
chr6 (287-339)||(18101442-18101494)
[»] chr8 (3 HSPs)
chr8 (14-144)||(12298013-12298143)
chr8 (287-341)||(1283317-1283371)
chr8 (287-341)||(8744260-8744314)
[»] chr4 (4 HSPs)
chr4 (222-295)||(51682021-51682094)
chr4 (287-339)||(1994791-1994843)
chr4 (262-314)||(30164152-30164205)
chr4 (287-323)||(1995523-1995559)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 9173409 - 9173749
Alignment:
Q  11 aggagcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagag 110  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||     
T  9173409 aggagcacagagacacaaagaacttcttgtagagaataatacacttcattctaatccagaattgaagatgcacctgaatttagagaagcatggtagagaa 9173508  T
Q  111 gtttatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggggcttataattcat------gtgtaagtgcatgtg 204  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||| ||| |    
T  9173509 gtttatcctcgtgaaattttttatatattttagaaggagttgtggagtgcatgtgtagattgtggggcttataattcatgtgtgagtgtgagtgtatgcg 9173608  T
Q  205 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaatt---------cattctca 295  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||| |||||||         ||||||||    
T  9173609 tgaatggaaaatgagaatggcacatgactaacttaagtgatgttttaatctcgtccctttattttaatttgatggatgtaattcattctcaccattctca 9173708  T
Q  296 tataagaatgtcattctcatagtatatgctctctacatata 336  Q
    | |||||||||||||||||||||||||| ||| || |||||    
T  9173709 tgtaagaatgtcattctcatagtatatgttctatatatata 9173749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 205 - 477
Target Start/End: Complemental strand, 9172430 - 9172181
Alignment:
Q  205 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaat 304  Q
    ||||||| |||||  ||||||||||||||||||||| |||||||||||||||||| ||||||         ||| ||||||||||||||||             
T  9172430 tgaatgggaaatggaaatggcacatgactaacttaagtgatgttttaatctcatccctttat---------atgactgtaattcattctcac-------- 9172348  T
Q  305 gtcattctcatagtatatgctctctacatatatatattcctaattttacaaaccaaaattaagcactttactaaaacatgacaagacattgacaataaaa 404  Q
      ||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9172347 --cattctcatagtatatgttct----atatatatattcctaattttacaaaccaaaattaagcactttactaaaacatgacaagacattgacaataaaa 9172254  T
Q  405 atttatttatacaatcaaactatttaatctatttcctgaatcacttcaagatgcaaattcataggtggtggtg 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9172253 atttatttatacaatcaaactatttaatctatttcctgaatcacttcaagatgcaaattcataggtggtggtg 9172181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 23691618 - 23691684
Alignment:
Q  227 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 293  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23691618 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23691684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 23710057 - 23710123
Alignment:
Q  227 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 293  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23710057 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23710123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 23728513 - 23728579
Alignment:
Q  227 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 293  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23728513 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23728579  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 23746969 - 23747035
Alignment:
Q  227 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 293  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23746969 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23747035  T

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Target: chr2 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 2203607 - 2203768
Alignment:
Q  14 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 113  Q
    |||||| ||||||||||||||| |||| || |||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||||||||||||    
T  2203607 agcacaaagacacaaagaactttttgctgataataatacacttcattctaatccagaattgaatatgcacatgaatttagagaagcacgctagagaggtt 2203706  T
Q  114 tatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 175  Q
    ||| |||||||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  2203707 tatactcatgaaaacttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 2203768  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 2206190 - 2206292
Alignment:
Q  214 aatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatgtcattctc 313  Q
    |||||||||| ||||||||| |||||| ||||  |||||||||| |  ||  ||||||||||| ||||   ||||||||||||||||  ||| |||||||    
T  2206190 aatgagaatgtcacatgactcacttaagtgataatttaatctcagccattccttttaatctgaaggctcatattcattctcatataaacatgccattctc 2206289  T
Q  314 ata 316  Q
    |||    
T  2206290 ata 2206292  T

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Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 15897418 - 15897257
Alignment:
Q  14 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 113  Q
    |||||| ||||||||||||||| |||| || |||||||||||||||||||||| | |||||||||||||| ||||||||||||| || ||||||||||||    
T  15897418 agcacaaagacacaaagaactttttgctgataataatacacttcattctaatccataattgaagatgcacatgaatttagagaagcacgctagagaggtt 15897319  T
Q  114 tatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 175  Q
    ||| |||| ||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15897318 tatactcacgaaaacttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 15897257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 31238850 - 31238941
Alignment:
Q  205 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 296  Q
    ||||||| | |||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  31238850 tgaatggcacatgacaatagcacatgactcacttaagtgatgttttaatctcatccctttattttaatctgatggttgtaattcattctcat 31238941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 8578664 - 8578566
Alignment:
Q  213 aaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatgtcattc 311  Q
    ||||||||||| |||||||||||||||| | |||||||||| ||||| |||  ||||||||||| || | | ||||||||||||| || ||||||||||    
T  8578664 aaatgagaatgacacatgactaacttaagttatgttttaatttcatcccttccttttaatctgaaggttattattcattctcataaaacaatgtcattc 8578566  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 31238941 - 31238995
Alignment:
Q  287 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 341  Q
    ||||||||||||||||||||||||||||||  ||||| | | || ||||||||||    
T  31238941 tcattctcatataagaatgtcattctcatatgatatgttatatatatatatatat 31238995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 15894798 - 15894718
Alignment:
Q  216 tgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 296  Q
    |||||||| |||||||||||||||| ||||  |||||||||| |  ||  ||||||||||| ||||   ||||||||||||    
T  15894798 tgagaatgacacatgactaacttaagtgataatttaatctcagccattccttttaatctgaaggctcatattcattctcat 15894718  T

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Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 18860714 - 18860875
Alignment:
Q  14 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 113  Q
    |||||| ||||||||||||||| ||||  | |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  18860714 agcacaaagacacaaagaactttttgctaataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaaccacgctagagaggtt 18860813  T
Q  114 tatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 175  Q
    ||| |||| ||||  ||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  18860814 tatactcacgaaaacttttacatatttcaaaagaagttgtggagtgcatgtgtagattgtgg 18860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 34607182 - 34607123
Alignment:
Q  237 ttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 296  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  34607182 ttaagtgatgttttaatctcatccctttattttaatttgatggctgtaattcattctcat 34607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 18861707 - 18861809
Alignment:
Q  214 aatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatgtcattctc 313  Q
    |||||||||||||||||||| |||||| ||||  |||||||| | |  ||  ||||||||||| ||||   ||||||||||||||||  ||| |||||||    
T  18861707 aatgagaatggcacatgactgacttaagtgataatttaatcttagccattccttttaatctgaaggctcatattcattctcatataaacatgccattctc 18861806  T
Q  314 ata 316  Q
    |||    
T  18861807 ata 18861809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 2358671 - 2358601
Alignment:
Q  226 acatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 296  Q
    |||||| | |||||| || |||||||||||||||  ||  |||||||||||||| ||||||| ||||||||    
T  2358671 acatgagtcacttaagtgttgttttaatctcatccattgcttttaatctgatgggtgtaatttattctcat 2358601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 24319779 - 24319922
Alignment:
Q  14 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 113  Q
    |||||| || |||||||||||| |||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||    
T  24319779 agcacaaaggcacaaagaactttttgctgataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaagcacgctagagaggtt 24319878  T
Q  114 tatcctcatgaaattttttatatatttcagaaggagttgtggag 157  Q
    ||| |||| ||||  ||||| |||||||| ||||||||||||||    
T  24319879 tatactcacgaaaaattttacatatttcaaaaggagttgtggag 24319922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 29406922 - 29406841
Alignment:
Q  215 atgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 296  Q
    |||| ||| |||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29406922 atgacaatagcacatgactcatttaagtgatgttttaatctcatccctttattttaatctgatggctgtaattcattctcat 29406841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 44289454 - 44289380
Alignment:
Q  222 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 296  Q
    |||||||||| | |||||| |||||||||||||||| |  ||  ||||||||||| |||||||||| ||||||||    
T  44289454 tggcacatgagtcacttaagtgatgttttaatctcacccattatttttaatctgacggctgtaatttattctcat 44289380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 27789319 - 27789392
Alignment:
Q  222 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctca 295  Q
    |||||||||| | |||||| |||||||||||||| |||  ||  |||||||| |||||||| |||| |||||||    
T  27789319 tggcacatgagtcacttaagtgatgttttaatctaatccattgtttttaatccgatggctgcaatttattctca 27789392  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 45517389 - 45517340
Alignment:
Q  266 ttttaatctgatggctgtaattcattctcatataagaatgtcattctcat 315  Q
    ||||||| |||||||| | |||||||||||||||| |||| |||||||||    
T  45517389 ttttaatttgatggctcttattcattctcatataaaaatgacattctcat 45517340  T

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Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 206 - 341
Target Start/End: Original strand, 28844792 - 28844927
Alignment:
Q  206 gaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatg 305  Q
    |||||| | |||| ||| |||||||||| | |||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  28844792 gaatggcacatgacaatagcacatgactcatttaagtgatgttttaatctcaaccctttattttaatctgatggctgtaattcattctcatataagaatg 28844891  T
Q  306 tcattctcatagtatatgctctctacatatatatat 341  Q
    |||||||||||  |||||  ||||| ||||||||||    
T  28844892 tcattctcatatgatatgtcctctatatatatatat 28844927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 28654296 - 28654247
Alignment:
Q  127 ttttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggg 176  Q
    ||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  28654296 ttttttaaatattttggagggagttgtggagtgcatgtgtagattgtggg 28654247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 18101442 - 18101494
Alignment:
Q  287 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatat 339  Q
    ||||||||||||||  ||||||||||||||  ||||| |||||| ||||||||    
T  18101442 tcattctcatataaagatgtcattctcataagatatgttctctatatatatat 18101494  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 12298143 - 12298013
Alignment:
Q  14 agcacagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 113  Q
    ||||||||| |||||||||||||| ||||| |||  |||||||||||||| || || ||||||||||||| || |||||||||| |||| ||||||| ||    
T  12298143 agcacagaggcacaaagaacttctggcagataatgctacacttcattctattccagcattgaagatgcacgtggatttagagaagcatggtagagagatt 12298044  T
Q  114 tatcctcatgaaattttttatatatttcaga 144  Q
    ||| ||||||||| |||||| ||||||||||    
T  12298043 tatactcatgaaaatttttacatatttcaga 12298013  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 1283371 - 1283317
Alignment:
Q  287 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 341  Q
    |||||||||||||| |  ||||||||||||||||||| |||||| ||||| ||||    
T  1283371 tcattctcatataaaatagtcattctcatagtatatgttctctatatatagatat 1283317  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 8744260 - 8744314
Alignment:
Q  287 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 341  Q
    |||||||||||||||||||||||||||| |  |||||| || || ||||||||||    
T  8744260 tcattctcatataagaatgtcattctcacatgatatgccctatatatatatatat 8744314  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 51682094 - 51682021
Alignment:
Q  222 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctca 295  Q
    ||||||||||||||||||  | ||||||||||| |||| |||  |||||||||  ||||||||||| |||||||    
T  51682094 tggcacatgactaacttaggttatgttttaatcgcatcccttgcttttaatctattggctgtaatttattctca 51682021  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 1994843 - 1994791
Alignment:
Q  287 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatat 339  Q
    |||||||||||||| |||| |||||||||||||||||  ||||| ||||||||    
T  1994843 tcattctcatataaaaatggcattctcatagtatatgtcctctatatatatat 1994791  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 30164152 - 30164205
Alignment:
Q  262 tttattttaatct-gatggctgtaattcattctcatataagaatgtcattctca 314  Q
    |||||||| |||| ||||||||  ||||||||||||||||| ||||||||||||    
T  30164152 tttattttgatcttgatggctgagattcattctcatataagtatgtcattctca 30164205  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 1995523 - 1995559
Alignment:
Q  287 tcattctcatataagaatgtcattctcatagtatatg 323  Q
    |||||||||||||| |||| |||||||||||||||||    
T  1995523 tcattctcatataaaaatgacattctcatagtatatg 1995559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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