View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0882_low_4 (Length: 564)

Name: NF0882_low_4
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0882_low_4
NF0882_low_4
[»] chr3 (6 HSPs)
chr3 (6-331)||(9173409-9173749)
chr3 (200-472)||(9172181-9172430)
chr3 (222-288)||(23691618-23691684)
chr3 (222-288)||(23710057-23710123)
chr3 (222-288)||(23728513-23728579)
chr3 (222-288)||(23746969-23747035)
[»] chr2 (2 HSPs)
chr2 (16-170)||(2203614-2203768)
chr2 (209-311)||(2206190-2206292)
[»] chr7 (5 HSPs)
chr7 (16-170)||(15897257-15897411)
chr7 (200-291)||(31238850-31238941)
chr7 (208-306)||(8578566-8578664)
chr7 (282-336)||(31238941-31238995)
chr7 (211-291)||(15894718-15894798)
[»] chr5 (4 HSPs)
chr5 (16-170)||(18860721-18860875)
chr5 (232-291)||(34607123-34607182)
chr5 (209-311)||(18861707-18861809)
chr5 (221-291)||(2358601-2358671)
[»] chr1 (5 HSPs)
chr1 (19-152)||(24319789-24319922)
chr1 (210-291)||(29406841-29406922)
chr1 (217-291)||(44289380-44289454)
chr1 (217-290)||(27789319-27789392)
chr1 (261-310)||(45517340-45517389)
[»] chr6 (3 HSPs)
chr6 (201-336)||(28844792-28844927)
chr6 (122-171)||(28654247-28654296)
chr6 (282-334)||(18101442-18101494)
[»] chr8 (3 HSPs)
chr8 (9-139)||(12298013-12298143)
chr8 (282-336)||(1283317-1283371)
chr8 (282-336)||(8744260-8744314)
[»] chr4 (4 HSPs)
chr4 (217-290)||(51682021-51682094)
chr4 (282-334)||(1994791-1994843)
chr4 (257-309)||(30164152-30164205)
chr4 (282-318)||(1995523-1995559)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 6 - 331
Target Start/End: Original strand, 9173409 - 9173749
Alignment:
Q  6 aggagcagagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagag 105  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||     
T  9173409 aggagcacagagacacaaagaacttcttgtagagaataatacacttcattctaatccagaattgaagatgcacctgaatttagagaagcatggtagagaa 9173508  T
Q  106 gtttatcctcatgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggggcttataattcat------gtgtaagtgcatgtg 199  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||| ||| |    
T  9173509 gtttatcctcgtgaaattttttatatattttagaaggagttgtggagtgcatgtgtagattgtggggcttataattcatgtgtgagtgtgagtgtatgcg 9173608  T
Q  200 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaatt---------cattctca 290  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||| |||||||         ||||||||    
T  9173609 tgaatggaaaatgagaatggcacatgactaacttaagtgatgttttaatctcgtccctttattttaatttgatggatgtaattcattctcaccattctca 9173708  T
Q  291 tataagaatgtcattctcatagtatatgctctctacatata 331  Q
    | |||||||||||||||||||||||||| ||| || |||||    
T  9173709 tgtaagaatgtcattctcatagtatatgttctatatatata 9173749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 200 - 472
Target Start/End: Complemental strand, 9172430 - 9172181
Alignment:
Q  200 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaat 299  Q
    ||||||| |||||  ||||||||||||||||||||| |||||||||||||||||| ||||||         ||| ||||||||||||||||             
T  9172430 tgaatgggaaatggaaatggcacatgactaacttaagtgatgttttaatctcatccctttat---------atgactgtaattcattctcac-------- 9172348  T
Q  300 gtcattctcatagtatatgctctctacatatatatattcctaattttacaaaccaaaattaagcactttactaaaacatgacaagacattgacaataaaa 399  Q
      ||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9172347 --cattctcatagtatatgttct----atatatatattcctaattttacaaaccaaaattaagcactttactaaaacatgacaagacattgacaataaaa 9172254  T
Q  400 atttatttatacaatcaaactatttaatctatttcctgaatcacttcaagatgcaaattcataggtggtggtg 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9172253 atttatttatacaatcaaactatttaatctatttcctgaatcacttcaagatgcaaattcataggtggtggtg 9172181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23691618 - 23691684
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23691618 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23691684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23710057 - 23710123
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23710057 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23710123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23728513 - 23728579
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23728513 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23728579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 23746969 - 23747035
Alignment:
Q  222 catgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattct 288  Q
    ||||||||||||||||  ||||||||||| ||| |||  ||||||||| ||||||| ||||||||||    
T  23746969 catgactaacttaaattgtgttttaatcttatcccttgtttttaatctaatggctgcaattcattct 23747035  T

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Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 2203614 - 2203768
Alignment:
Q  16 agacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctc 115  Q
    ||||||||||||||| |||| || |||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||||||||||||||| |||    
T  2203614 agacacaaagaactttttgctgataataatacacttcattctaatccagaattgaatatgcacatgaatttagagaagcacgctagagaggtttatactc 2203713  T
Q  116 atgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 170  Q
    ||||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  2203714 atgaaaacttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 2203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 2206190 - 2206292
Alignment:
Q  209 aatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatgtcattctc 308  Q
    |||||||||| ||||||||| |||||| ||||  |||||||||| |  ||  ||||||||||| ||||   ||||||||||||||||  ||| |||||||    
T  2206190 aatgagaatgtcacatgactcacttaagtgataatttaatctcagccattccttttaatctgaaggctcatattcattctcatataaacatgccattctc 2206289  T
Q  309 ata 311  Q
    |||    
T  2206290 ata 2206292  T

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Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 15897411 - 15897257
Alignment:
Q  16 agacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctc 115  Q
    ||||||||||||||| |||| || |||||||||||||||||||||| | |||||||||||||| ||||||||||||| || ||||||||||||||| |||    
T  15897411 agacacaaagaactttttgctgataataatacacttcattctaatccataattgaagatgcacatgaatttagagaagcacgctagagaggtttatactc 15897312  T
Q  116 atgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 170  Q
    | ||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15897311 acgaaaacttttacatatttcaaaaggagttgtggagtgcatgtgtagattgtgg 15897257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 31238850 - 31238941
Alignment:
Q  200 tgaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    ||||||| | |||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  31238850 tgaatggcacatgacaatagcacatgactcacttaagtgatgttttaatctcatccctttattttaatctgatggttgtaattcattctcat 31238941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 306
Target Start/End: Complemental strand, 8578664 - 8578566
Alignment:
Q  208 aaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatgtcattc 306  Q
    ||||||||||| |||||||||||||||| | |||||||||| ||||| |||  ||||||||||| || | | ||||||||||||| || ||||||||||    
T  8578664 aaatgagaatgacacatgactaacttaagttatgttttaatttcatcccttccttttaatctgaaggttattattcattctcataaaacaatgtcattc 8578566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 31238941 - 31238995
Alignment:
Q  282 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 336  Q
    ||||||||||||||||||||||||||||||  ||||| | | || ||||||||||    
T  31238941 tcattctcatataagaatgtcattctcatatgatatgttatatatatatatatat 31238995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 15894798 - 15894718
Alignment:
Q  211 tgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||||||| |||||||||||||||| ||||  |||||||||| |  ||  ||||||||||| ||||   ||||||||||||    
T  15894798 tgagaatgacacatgactaacttaagtgataatttaatctcagccattccttttaatctgaaggctcatattcattctcat 15894718  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 18860721 - 18860875
Alignment:
Q  16 agacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctc 115  Q
    ||||||||||||||| ||||  | |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |||    
T  18860721 agacacaaagaactttttgctaataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaaccacgctagagaggtttatactc 18860820  T
Q  116 atgaaattttttatatatttcagaaggagttgtggagtgcatgtgtagattgtgg 170  Q
    | ||||  ||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  18860821 acgaaaacttttacatatttcaaaagaagttgtggagtgcatgtgtagattgtgg 18860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 34607182 - 34607123
Alignment:
Q  232 ttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  34607182 ttaagtgatgttttaatctcatccctttattttaatttgatggctgtaattcattctcat 34607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 18861707 - 18861809
Alignment:
Q  209 aatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatgtcattctc 308  Q
    |||||||||||||||||||| |||||| ||||  |||||||| | |  ||  ||||||||||| ||||   ||||||||||||||||  ||| |||||||    
T  18861707 aatgagaatggcacatgactgacttaagtgataatttaatcttagccattccttttaatctgaaggctcatattcattctcatataaacatgccattctc 18861806  T
Q  309 ata 311  Q
    |||    
T  18861807 ata 18861809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 2358671 - 2358601
Alignment:
Q  221 acatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||||| | |||||| || |||||||||||||||  ||  |||||||||||||| ||||||| ||||||||    
T  2358671 acatgagtcacttaagtgttgttttaatctcatccattgcttttaatctgatgggtgtaatttattctcat 2358601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 24319789 - 24319922
Alignment:
Q  19 cacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtttatcctcatg 118  Q
    |||||||||||| |||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||| |||| |    
T  24319789 cacaaagaactttttgctgataataatacacttcattctaatccagaattgaagatgcacatgaatttagagaagcacgctagagaggtttatactcacg 24319888  T
Q  119 aaattttttatatatttcagaaggagttgtggag 152  Q
    |||  ||||| |||||||| ||||||||||||||    
T  24319889 aaaaattttacatatttcaaaaggagttgtggag 24319922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 29406922 - 29406841
Alignment:
Q  210 atgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||| ||| |||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29406922 atgacaatagcacatgactcatttaagtgatgttttaatctcatccctttattttaatctgatggctgtaattcattctcat 29406841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 44289454 - 44289380
Alignment:
Q  217 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcat 291  Q
    |||||||||| | |||||| |||||||||||||||| |  ||  ||||||||||| |||||||||| ||||||||    
T  44289454 tggcacatgagtcacttaagtgatgttttaatctcacccattatttttaatctgacggctgtaatttattctcat 44289380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 27789319 - 27789392
Alignment:
Q  217 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctca 290  Q
    |||||||||| | |||||| |||||||||||||| |||  ||  |||||||| |||||||| |||| |||||||    
T  27789319 tggcacatgagtcacttaagtgatgttttaatctaatccattgtttttaatccgatggctgcaatttattctca 27789392  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 45517389 - 45517340
Alignment:
Q  261 ttttaatctgatggctgtaattcattctcatataagaatgtcattctcat 310  Q
    ||||||| |||||||| | |||||||||||||||| |||| |||||||||    
T  45517389 ttttaatttgatggctcttattcattctcatataaaaatgacattctcat 45517340  T

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Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 28844792 - 28844927
Alignment:
Q  201 gaatggaaaatgagaatggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctcatataagaatg 300  Q
    |||||| | |||| ||| |||||||||| | |||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  28844792 gaatggcacatgacaatagcacatgactcatttaagtgatgttttaatctcaaccctttattttaatctgatggctgtaattcattctcatataagaatg 28844891  T
Q  301 tcattctcatagtatatgctctctacatatatatat 336  Q
    |||||||||||  |||||  ||||| ||||||||||    
T  28844892 tcattctcatatgatatgtcctctatatatatatat 28844927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 28654296 - 28654247
Alignment:
Q  122 ttttttatatatttcagaaggagttgtggagtgcatgtgtagattgtggg 171  Q
    ||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  28654296 ttttttaaatattttggagggagttgtggagtgcatgtgtagattgtggg 28654247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 18101442 - 18101494
Alignment:
Q  282 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatat 334  Q
    ||||||||||||||  ||||||||||||||  ||||| |||||| ||||||||    
T  18101442 tcattctcatataaagatgtcattctcataagatatgttctctatatatatat 18101494  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 12298143 - 12298013
Alignment:
Q  9 agcagagagacacaaagaacttcttgcagagaataatacacttcattctaatcgagaattgaagatgcacctgaatttagagaaccatgctagagaggtt 108  Q
    |||| |||| |||||||||||||| ||||| |||  |||||||||||||| || || ||||||||||||| || |||||||||| |||| ||||||| ||    
T  12298143 agcacagaggcacaaagaacttctggcagataatgctacacttcattctattccagcattgaagatgcacgtggatttagagaagcatggtagagagatt 12298044  T
Q  109 tatcctcatgaaattttttatatatttcaga 139  Q
    ||| ||||||||| |||||| ||||||||||    
T  12298043 tatactcatgaaaatttttacatatttcaga 12298013  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 1283371 - 1283317
Alignment:
Q  282 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 336  Q
    |||||||||||||| |  ||||||||||||||||||| |||||| ||||| ||||    
T  1283371 tcattctcatataaaatagtcattctcatagtatatgttctctatatatagatat 1283317  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 8744260 - 8744314
Alignment:
Q  282 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatatat 336  Q
    |||||||||||||||||||||||||||| |  |||||| || || ||||||||||    
T  8744260 tcattctcatataagaatgtcattctcacatgatatgccctatatatatatatat 8744314  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 51682094 - 51682021
Alignment:
Q  217 tggcacatgactaacttaaatgatgttttaatctcatctctttattttaatctgatggctgtaattcattctca 290  Q
    ||||||||||||||||||  | ||||||||||| |||| |||  |||||||||  ||||||||||| |||||||    
T  51682094 tggcacatgactaacttaggttatgttttaatcgcatcccttgcttttaatctattggctgtaatttattctca 51682021  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 1994843 - 1994791
Alignment:
Q  282 tcattctcatataagaatgtcattctcatagtatatgctctctacatatatat 334  Q
    |||||||||||||| |||| |||||||||||||||||  ||||| ||||||||    
T  1994843 tcattctcatataaaaatggcattctcatagtatatgtcctctatatatatat 1994791  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 30164152 - 30164205
Alignment:
Q  257 tttattttaatct-gatggctgtaattcattctcatataagaatgtcattctca 309  Q
    |||||||| |||| ||||||||  ||||||||||||||||| ||||||||||||    
T  30164152 tttattttgatcttgatggctgagattcattctcatataagtatgtcattctca 30164205  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 1995523 - 1995559
Alignment:
Q  282 tcattctcatataagaatgtcattctcatagtatatg 318  Q
    |||||||||||||| |||| |||||||||||||||||    
T  1995523 tcattctcatataaaaatgacattctcatagtatatg 1995559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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