View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0882_low_5 (Length: 501)
Name: NF0882_low_5
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0882_low_5 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 32 - 501
Target Start/End: Original strand, 11876013 - 11876476
Alignment:
| Q |
32 |
atatatgactattcaaacatagcaaaaccagattttagaaaattatcgaccaacctactcatatctctctcttgaactttaagtaagattattttaattg |
131 |
Q |
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| T |
11876013 |
atatatgactattcaaacatagcaaaaccagattttagaacattatcgaccaacctactcatatctctctcttgaactgtaagtaagattattttaattg |
11876112 |
T |
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| Q |
132 |
ccaaatgctaagttgtcaagttattattattaatattatccaacatcacaaaacccaatctcataacggtagtttgcacgtttcattcatcaattgattc |
231 |
Q |
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| T |
11876113 |
ccaaatgctaagttgtcaagttattattattaatattatccaacatcacaaaacccaatctcataacggtagtttgcacgtttcattcatcaattgattc |
11876212 |
T |
|
| Q |
232 |
catagttttgtgttacaagacgacattgatcagttgctaaaccctatgcaacgagcaaaatta---actattaactactcctattttaattttaatccta |
328 |
Q |
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| T |
11876213 |
catagttttgtgttacaagacgacattgatcagttgctaaaccctatgcaacgagcaaaattaactactattaactactcctattttaattttaatccta |
11876312 |
T |
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| Q |
329 |
tgaaattcaccaaaggggacatatctata-gcaaatcatataatggtcaatttaagtcagaattgtactttgattaaaaagaaaaattatcgtagtcaga |
427 |
Q |
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| T |
11876313 |
tgaaattcaccaaa-gggacatatctataggcaaatcaaataaaggtcaatttaagtcagaattgtactttgattcaaaaaaataaataacgtagtcaga |
11876411 |
T |
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| Q |
428 |
atagtaatactactagggctgctagtagtaggtttattttgcaaaataggaccacatgcatgcaaatgggtttc |
501 |
Q |
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| T |
11876412 |
atagtactacta---------ctagtagtaggtttattttgcaaaataggaccacatgcatgcaactgggtttc |
11876476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 367 - 501
Target Start/End: Complemental strand, 12360597 - 12360468
Alignment:
| Q |
367 |
ataatggtcaatttaagtcagaattgtactttgattaaaaagaaaaattatcgtagtcagaatagtaatactactagggctgctagtagtaggtttattt |
466 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
12360597 |
ataaaggtcaatttaag--agaattgtactttgattaaaaaaaaaaattaacgtagtcagaatagtactactactagggct---agtagtaggtttattt |
12360503 |
T |
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| Q |
467 |
tgcaaaataggaccacatgcatgcaaatgggtttc |
501 |
Q |
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| T |
12360502 |
tgcaaaataggaccacatgcatgcaactgggtttc |
12360468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 12361943 - 12361995
Alignment:
| Q |
449 |
ctagtagtaggtttattttgcaaaataggaccacatgcatgcaaatgggtttc |
501 |
Q |
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| T |
12361943 |
ctagtagtaggtttattttgcaacataggaccacatgcatgcaactgggtttc |
12361995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 12361010 - 12360975
Alignment:
| Q |
120 |
ttattttaattgccaaatgctaagttgtcaagttat |
155 |
Q |
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| T |
12361010 |
ttattttaattgccaaatgctaagttgtcaagttat |
12360975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 11886664 - 11886762
Alignment:
| Q |
166 |
attatccaacatcacaaaacccaatctcataacggtagtttgcacgtttcattcatcaattgattccatagttttgtgttacaagacgacattgatcag |
264 |
Q |
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||||||||||| ||| |||||| || ||||||||||| | |||||||||||||||| | || | || ||||||| |||||||| |||||||||||| |
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| T |
11886664 |
attatccaacagcaccaaaccctatttcataacggtactctgcacgtttcattcatttactggtgccttagttttttgttacaaacagacattgatcag |
11886762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 11899780 - 11899848
Alignment:
| Q |
204 |
tttgcacgtttcattcatcaattgattccatagttttgtgttacaagacgacattgatcagttgctaaa |
272 |
Q |
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| T |
11899780 |
tttgcacgtttcattcatttattggtgccttaattttgggttacagaccgacattgatcagttgctaaa |
11899848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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