View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0882_low_7 (Length: 403)
Name: NF0882_low_7
Description: NF0882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0882_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 22 - 403
Target Start/End: Original strand, 47043060 - 47043443
Alignment:
| Q |
22 |
catcatcattgaattaattagacaaatgatttttcattannnnnnnaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
121 |
Q |
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| T |
47043060 |
catcatcattggattaattagacaaatgatttttcattatttttttaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
47043159 |
T |
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| Q |
122 |
taatattgagcaattttagaataagag--aatacttcaaattttgatttcatttaaattaatatgatagtaaatagttaccttcgatgccaaaattttga |
219 |
Q |
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| T |
47043160 |
taatattgagcaattttagaataagagagaatacttcaaattttgatttcatttaaattaatatgatagtaaatagtgaccttcgatgccaacattttga |
47043259 |
T |
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| Q |
220 |
tttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcaccgggttagctccaccgccacgactctccatggtcac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47043260 |
tttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcacctggttagctccaccgccacgactctccatggtcac |
47043359 |
T |
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| Q |
320 |
attacaattaacatacgtatccttttggctccctgaagatgtgtttcccataacagagaaccgttaagcatcacattagacaaa |
403 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47043360 |
attacaattaacatacgtctccttttggctccctgaagatgtgtttcccataaaagagaaccgttaagcatcacattagacaaa |
47043443 |
T |
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