View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0883_high_14 (Length: 273)

Name: NF0883_high_14
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0883_high_14
NF0883_high_14
[»] chr5 (11 HSPs)
chr5 (87-141)||(11354271-11354325)
chr5 (87-141)||(11373068-11373122)
chr5 (74-145)||(2904774-2904845)
chr5 (74-146)||(9074493-9074565)
chr5 (74-145)||(2844831-2844902)
chr5 (74-145)||(2856658-2856729)
chr5 (74-145)||(2874268-2874339)
chr5 (190-240)||(8641772-8641822)
chr5 (57-146)||(8641630-8641719)
chr5 (83-144)||(8644485-8644546)
chr5 (74-146)||(8529204-8529276)
[»] chr3 (1 HSPs)
chr3 (10-47)||(55101452-55101489)
[»] chr4 (1 HSPs)
chr4 (74-146)||(9443365-9443437)
[»] chr1 (2 HSPs)
chr1 (74-144)||(5131034-5131104)
chr1 (191-238)||(5131160-5131207)
[»] chr7 (1 HSPs)
chr7 (74-146)||(48361619-48361691)


Alignment Details
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 11354325 - 11354271
Alignment:
Q  87 ggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacc 141  Q
    |||||||||||  ||||||||||||||||||||| | ||||||||||||||||||    
T  11354325 ggagaagggaaggattgaaacttctcactttcaaagttgaaacacaatattgacc 11354271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 11373068 - 11373122
Alignment:
Q  87 ggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacc 141  Q
    |||||||||||  ||||||||||||||||||||| | ||||||||||||||||||    
T  11373068 ggagaagggaaggattgaaacttctcactttcaaagttgaaacacaatattgacc 11373122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 2904845 - 2904774
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttg 145  Q
    ||||| ||||||||||||||| ||| |||| | | ||||||||||||  |||||||||||||||||| ||||    
T  2904845 aaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttg 2904774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 9074565 - 9074493
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttgc 146  Q
    ||||||||| ||||||||||| ||| | || ||| ||||||||||||  | |||| |||||||||||||||||    
T  9074565 aaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgc 9074493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 2844902 - 2844831
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttg 145  Q
    ||||||||||||||||||||| ||  | || ||| ||||||||||||   ||||||||||||||||| ||||    
T  2844902 aaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttg 2844831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 2856729 - 2856658
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttg 145  Q
    ||||||||||||||||||||| ||  | || ||| ||||||||||||   ||||||||||||||||| ||||    
T  2856729 aaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttg 2856658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 2874339 - 2874268
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttg 145  Q
    ||||||||||||||||||||| ||  | || ||| ||||||||||||   ||||||||||||||||| ||||    
T  2874339 aaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttg 2874268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 8641772 - 8641822
Alignment:
Q  190 taagcctcgaaatacaaatctgattatccacttcaatatttctccatgatg 240  Q
    |||| ||||||||| ||||||||  ||||||||||| ||||||||||||||    
T  8641772 taagactcgaaatagaaatctgaggatccacttcaacatttctccatgatg 8641822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 8641630 - 8641719
Alignment:
Q  57 ttattattattatgttgaaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttgc 146  Q
    |||||||||| || |  ||||||||||||||||||||| ||||| |  ||  |||||||||| |  | |||||| |||||||||||||||    
T  8641630 ttattattatgatttccaaacacatgtggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgc 8641719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 8644485 - 8644546
Alignment:
Q  83 tggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgaccttt 144  Q
    |||||||||||| ||| |||| ||| ||||||||||||  | |||||||||||| |||||||    
T  8644485 tggaggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagaccttt 8644546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 8529204 - 8529276
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttgc 146  Q
    ||||||||||||||||||||| ||  | || ||| ||||| |||||| || ||||  ||||||||||||||||    
T  8529204 aaacacatgtggaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgc 8529276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 55101489 - 55101452
Alignment:
Q  10 aataatatcgagaagcccgttatccactgattgttagg 47  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55101489 aataatatcgagaagcccgttatccactgattgttagg 55101452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 9443365 - 9443437
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttgc 146  Q
    ||||||||||||||||||||| ||| | || ||| |||||||||||| || ||||  ||||||||||||||||    
T  9443365 aaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgc 9443437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 5131034 - 5131104
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgaccttt 144  Q
    |||||| |||||||||||||||||| |||| ||  ||||||||||||  ||||||||||| | ||||||||    
T  5131034 aaacacgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgaccttt 5131104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 5131160 - 5131207
Alignment:
Q  191 aagcctcgaaatacaaatctgattatccacttcaatatttctccatga 238  Q
    ||||||||||||| ||||||||  ||||||||||| ||||||||||||    
T  5131160 aagcctcgaaatagaaatctgaagatccacttcaacatttctccatga 5131207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 48361691 - 48361619
Alignment:
Q  74 aaacacatgtggaggagaagggaataattgaaacttctcactttcaaggctgaaacacaatattgacctttgc 146  Q
    ||||||||||||||||||||| ||| | || | | ||||||||||||  | |||| |||||||||||||||||    
T  48361691 aaacacatgtggaggagaaggaaatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgc 48361619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 677 times since January 2019
Visitors: 6719