View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0883_high_19 (Length: 250)

Name: NF0883_high_19
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0883_high_19
NF0883_high_19
[»] chr2 (3 HSPs)
chr2 (6-230)||(26268583-26268807)
chr2 (64-114)||(17739254-17739304)
chr2 (83-146)||(27401854-27401917)
[»] chr7 (2 HSPs)
chr7 (136-230)||(11677332-11677426)
chr7 (42-146)||(15010924-15011028)
[»] chr6 (5 HSPs)
chr6 (43-179)||(12478557-12478693)
chr6 (47-146)||(16165812-16165911)
chr6 (44-114)||(12484611-12484681)
chr6 (43-178)||(17827253-17827388)
chr6 (83-146)||(23292764-23292829)
[»] chr4 (6 HSPs)
chr4 (96-208)||(17948427-17948537)
chr4 (96-208)||(17952279-17952389)
chr4 (43-146)||(18420873-18420978)
chr4 (64-112)||(17957253-17957301)
chr4 (64-143)||(13047296-13047374)
chr4 (67-114)||(9250608-9250654)
[»] scaffold0417 (1 HSPs)
scaffold0417 (43-146)||(1802-1903)
[»] chr8 (4 HSPs)
chr8 (44-146)||(17124457-17124560)
chr8 (44-128)||(14400267-14400352)
chr8 (47-124)||(17984556-17984633)
chr8 (64-128)||(21675609-21675673)
[»] scaffold0123 (1 HSPs)
scaffold0123 (47-114)||(33002-33069)
[»] chr3 (3 HSPs)
chr3 (43-146)||(25487733-25487834)
chr3 (64-127)||(15855505-15855569)
chr3 (78-114)||(19636651-19636687)
[»] scaffold0115 (1 HSPs)
scaffold0115 (46-176)||(41465-41597)
[»] chr5 (2 HSPs)
chr5 (44-114)||(17362378-17362449)
chr5 (71-146)||(20846657-20846732)
[»] scaffold0186 (1 HSPs)
scaffold0186 (83-179)||(10711-10808)
[»] chr1 (1 HSPs)
chr1 (64-105)||(15807183-15807224)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 26268807 - 26268583
Alignment:
6 ttgacctccgcgtcgttgtttaaatggcgtaggtgatttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctc 105  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26268807 ttgaccaccgcgtcattgtttaaatggcgtaggtgatttacaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctc 26268708  T
106 gttttttgcattggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactcaatgtgttga 205  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26268707 gttttttgcattggagtcttagttgtagggctcagattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactcaatgtgttga 26268608  T
206 gattgagatttaatcttgatgatgt 230  Q
    |||||||||||||||||| ||||||    
26268607 gattgagatttaatcttggtgatgt 26268583  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 17739304 - 17739254
Alignment:
64 ttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc 114  Q
    |||||||||||||||||| ||||||||||||  ||||||||||| ||||||    
17739304 ttgcttggtgagtatgttagaggctagcttttgagctacctcgtcttttgc 17739254  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 27401917 - 27401854
Alignment:
83 gaggctagctttgaagctacctcgttttttgcatt-ggagtcttagttgtagggctctgattagg 146  Q
    |||||||| |||| |||||||||||| ||||| || |||||||||||| ||||||||| ||||||    
27401917 gaggctagatttggagctacctcgttctttgctttgggagtcttagtt-tagggctcttattagg 27401854  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 11677426 - 11677332
Alignment:
136 ctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactcaatgtgttgagattgagatttaatcttgatgatgt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| | ||||||||||||||||| |||| | ||||||    
11677426 ctctgattaggtgtcagtcttgagtcgtttatttttcatgtctttgatacttattcactcagtatgttgagattgagattttatctgggtgatgt 11677332  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 15010924 - 15011028
Alignment:
42 tttgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgt--tttttgcattggagtcttagttgtagggctc 138  Q
    |||||||||||||||| ||||||| |||  ||||||||| | ||||||||||||| |||||||||||   |||  | |||||||||||||| |||||||     
15010924 tttgcaggattagttgctttgctttgct--gtgagtatgcttgaggctagctttggagctacctcgtccctttgtctttggagtcttagtt-tagggcta 15011020  T
139 tgattagg 146  Q
    ||||||||    
15011021 tgattagg 15011028  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 12478557 - 12478693
Alignment:
43 ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgt-tttttgcattgg-agtcttagttgtagggctctg 140  Q
    ||||||||||||||| |||| ||||||| ||||||||   ||||||||||||||||||||||| | ||||||| |||| |||||||||| ||||||||||    
12478557 ttgcaggattagttgctttgattgcttg-tgagtatgcatgaggctagctttgaagctacctcatctttttgctttgggagtcttagtt-tagggctctg 12478654  T
141 attaggtgtcagtcttgagtcgtttatttttcatgtctt 179  Q
    |||||||||| |||||  ||| |||||||||||||||||    
12478655 attaggtgtcggtcttatgtcatttatttttcatgtctt 12478693  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 16165812 - 16165911
Alignment:
47 aggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattggagtcttagttgtagggctctgatta 144  Q
    |||||||||  |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||||| |||    
16165812 aggattagtgtttttgctttgcttg-tgagtatgttggaggctggctttgaagctacctcgtttctttgctttggagtcttag-tgtcgggctctgttta 16165909  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 12484681 - 12484611
Alignment:
44 tgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc 114  Q
    |||||||||||||||||   |||||||||||||||| |||| ||||| |||| ||||||||| | ||||||    
12484681 tgcaggattagttgtttgctttgcttggtgagtatgctggatgctagttttggagctacctcatcttttgc 12484611  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 17827253 - 17827388
Alignment:
43 ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattgg-agtcttagttgtagggctctg 140  Q
    ||||||||||||||  |||| ||||||| ||| |||| | ||||||| | ||| ||||||||||| | ||||| |||| |||||||| | ||||||| ||    
17827253 ttgcaggattagtttctttgattgcttg-tgattatgcttgaggctaaccttggagctacctcgtctctttgctttgggagtcttagct-tagggctttg 17827350  T
141 attaggtgtcagtcttgagtcgtttatttttcatgtct 178  Q
    |||||||||  |||||  |||||||||  |||||||||    
17827351 attaggtgttggtcttatgtcgtttatgcttcatgtct 17827388  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 23292829 - 23292764
Alignment:
83 gaggctagctttgaagctacctcgt-tttttgcattggagtcttagt-tgtagggctctgattagg 146  Q
    ||||||||||||||||||| ||||| |||||   ||||||||||||| ||| ||||||||||||||    
23292829 gaggctagctttgaagctatctcgtctttttcttttggagtcttagtgtgtcgggctctgattagg 23292764  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 17948427 - 17948537
Alignment:
96 aagctacctcgttttttgcattggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactc 195  Q
    |||||||||||  ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || || | |||||| ||||||||    
17948427 aagctacctcggctttcgcattggagtcttagttgtagggttttgattaggtgtcagtcttgagtcgtttattttttatatccttgagacttattcactc 17948526  T
196 aatgtgttgagat 208  Q
      |||||||||||    
17948527 --tgtgttgagat 17948537  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 17952279 - 17952389
Alignment:
96 aagctacctcgttttttgcattggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactc 195  Q
    |||||||||||  ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || || | |||||| ||||||||    
17952279 aagctacctcggctttcgcattggagtcttagttgtagggttttgattaggtgtcagtcttgagtcgtttattttttatatccttgagacttattcactc 17952378  T
196 aatgtgttgagat 208  Q
      |||||||||||    
17952379 --tgtgttgagat 17952389  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 18420873 - 18420978
Alignment:
43 ttgcaggattagttgttttg--cttgcttggtgagtatgttggagg-ctagctttgaagctacctcgt-tttttgcattggagtcttagttgtagggctc 138  Q
    ||||||||||||||||||||  ||||||| ||||||||| | |||| |||||||||||||| |||||| | ||| | |||||||||||||| ||||||||    
18420873 ttgcaggattagttgttttgaccttgctt-gtgagtatgcttgaggactagctttgaagctgcctcgtctcttttctttggagtcttagtt-tagggctc 18420970  T
139 tgattagg 146  Q
    ||||||||    
18420971 tgattagg 18420978  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 17957301 - 17957253
Alignment:
64 ttgcttggtgagtatgttggaggctagctttgaagctacctcgtttttt 112  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| ||||    
17957301 ttgcttggtgagtatgttggaggctagatttggagctacctcgtctttt 17957253  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 13047296 - 13047374
Alignment:
64 ttgcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattggagtcttagttgtagggctctgatt 143  Q
    ||||||||||||| || | ||||||||||||| ||||||||||||| | ||| |||||||||||| | |||||||||||||    
13047296 ttgcttggtgagt-tgctagaggctagctttggagctacctcgtttatctgctttggagtcttag-tatagggctctgatt 13047374  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 9250654 - 9250608
Alignment:
67 cttggtgagtatgttggaggctagctttgaagctacctcgttttttgc 114  Q
    |||||||||| || ||||||||||||||||||||||||||| ||||||    
9250654 cttggtgagt-tgctggaggctagctttgaagctacctcgtcttttgc 9250608  T

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Target: scaffold0417 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 1903 - 1802
Alignment:
43 ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcattggagtcttagttgtagggctctgat 142  Q
    ||||||||||||||| |||| ||||||| |||||||| | ||||||||||||| ||||| |||||||||||| |||||||||||| ||| ||||||| ||    
1903 ttgcaggattagttgctttgattgcttg-tgagtatgcttgaggctagctttggagctaactcgttttttgctttggagtcttag-tgtcgggctctaat 1806  T
143 tagg 146  Q
    ||||    
1805 tagg 1802  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 17124560 - 17124457
Alignment:
44 tgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcattggagtct-tagttgtagggctctga 141  Q
    |||||||||| ||||||||||| ||||  |||||||| | ||||||||||||| |||||||||||||| | | ||||||||| |||||||||||||||||    
17124560 tgcaggattaattgttttgctttgctta-tgagtatgcttgaggctagctttggagctacctcgttttgttccttggagtctatagttgtagggctctga 17124462  T
142 ttagg 146  Q
    |||||    
17124461 ttagg 17124457  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 14400267 - 14400352
Alignment:
44 tgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattggagtcttagt 128  Q
    |||| |||||||| |||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||    
14400267 tgcaagattagttcttttgctttgcttg-tgagtatgctggaggctagctttggagctacctcgtttctttgctttggagtcttagt 14400352  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 17984556 - 17984633
Alignment:
47 aggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcattggagtct 124  Q
    ||||||||||  |||||||| || ||||||||| | ||||||||||||| ||||| |||||||||||  |||||||||    
17984556 aggattagttactttgcttgatttgtgagtatgcttgaggctagctttggagctagctcgttttttgttttggagtct 17984633  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 21675673 - 21675609
Alignment:
64 ttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcatt-ggagtcttagt 128  Q
    ||||||||||||| || ||||||||| ||||| ||||||||||| |||||| || |||||||||||    
21675673 ttgcttggtgagt-tgctggaggctacctttggagctacctcgtcttttgctttcggagtcttagt 21675609  T

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Target: scaffold0123 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 33069 - 33002
Alignment:
47 aggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc 114  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||    
33069 aggatttgttgctttgcttgcttggtgagtttgctggaggctagctttggagctacctcgtcttttgc 33002  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 25487733 - 25487834
Alignment:
43 ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgt-tttttgcattggagtcttagttgtagggctctga 141  Q
    ||||| ||||||||||||||||||||| ||||||||| | ||||||||| ||||||| ||||||| | ||||| || |||||||| || |||||||||||    
25487733 ttgcatgattagttgttttgcttgctt-gtgagtatgcttgaggctagc-ttgaagcaacctcgtctctttgctttagagtcttaatt-tagggctctga 25487829  T
142 ttagg 146  Q
    |||||    
25487830 ttagg 25487834  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 15855569 - 15855505
Alignment:
64 ttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc-attggagtcttag 127  Q
    |||||||||||||||| | ||||||||||||| ||||||| | | ||||||  ||||||||||||    
15855569 ttgcttggtgagtatgctagaggctagctttggagctaccccatcttttgcttttggagtcttag 15855505  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 19636651 - 19636687
Alignment:
78 tgttggaggctagctttgaagctacctcgttttttgc 114  Q
    |||||||||||||||||| ||||||||||| ||||||    
19636651 tgttggaggctagctttggagctacctcgtcttttgc 19636687  T

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Target: scaffold0115 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 41465 - 41597
Alignment:
46 caggattagttgttttgc--ttgcttggtgagtatgttggagg-ctagctttgaagctacctcgttt-tttgcattggagtcttagttgtagggctctga 141  Q
    |||||||||||| |||||  |||||||| ||||||| | |||| ||||||||| ||||||||||| | ||| | ||| | |||||||| |||||||||||    
41465 caggattagttgctttgcctttgcttgg-gagtatgcttgaggactagctttggagctacctcgtctcttttctttgaattcttagtt-tagggctctga 41562  T
142 ttaggtgtcagtcttgagtcgtttatttttcatgt 176  Q
    |||||||||||||||   || ||||||||||||||    
41563 ttaggtgtcagtcttttttcatttatttttcatgt 41597  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 17362449 - 17362378
Alignment:
44 tgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc 114  Q
    |||| |||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||| || ||||||    
17362449 tgcatgattagttgtttagctttgcttggtgagtatgatggaggctagctttggagctaccttgtgttttgc 17362378  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 20846657 - 20846732
Alignment:
71 gtgagtatgttggaggctagctttgaagctacctcgttttttgcattgg-agtcttagttgtagggctctgattagg 146  Q
    ||||||||| | |||||||| |||| |||||||| || |||| | |||| |||||||||| ||||||||||||||||    
20846657 gtgagtatgcttgaggctagatttggagctaccttgtctttttctttgggagtcttagtt-tagggctctgattagg 20846732  T

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Target: scaffold0186 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 10808 - 10711
Alignment:
83 gaggctagctttgaagctacctcgttt-tttgcatt-ggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtctt 179  Q
    |||| |||||||| ||||||||||| | ||||  || |||||||||||| ||||| |||||||||| ||| |||||  |||||||||||||||||||||    
10808 gaggatagctttggagctacctcgtctctttgttttaggagtcttagtt-tagggttctgattaggcgtcggtcttatgtcgtttatttttcatgtctt 10711  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 15807183 - 15807224
Alignment:
64 ttgcttggtgagtatgttggaggctagctttgaagctacctc 105  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
15807183 ttgcttggtgagtatgctggaggatagctttgaagctacctc 15807224  T

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