View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0883_low_1 (Length: 639)
Name: NF0883_low_1
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0883_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 101 - 425
Target Start/End: Complemental strand, 8571441 - 8571118
Alignment:
| Q |
101 |
ttgaactttgaataatgagataatctttccatgttggtcttgtacacaatcaaaaagggttatttcacatagctaagtactcatttctaattatgacaca |
200 |
Q |
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| T |
8571441 |
ttgaactttgaataatgagataatctttccatgttggtcttgtacacaatcaaaa-gggttatttcacatagctaagtactcatttctaattatgacaca |
8571343 |
T |
|
| Q |
201 |
ggggtggtttatgataaattgcaggtaaaatttgactgtccacaaattcgatgacaataaactttctaagcaaatttagagtgttttaaatactgttgaa |
300 |
Q |
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| T |
8571342 |
ggggtggtttatgataaattgcaggtaaaatttgactgtccacaaattcgatgacaataaactttctaagcaaatttagagtgttttaaatactgttgaa |
8571243 |
T |
|
| Q |
301 |
ctaatttttgcactttcatttatataagaaagaatatcattcttgttctgagataggaatgagccaacaagcatatggaaggaactgtattagaaaagaa |
400 |
Q |
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| T |
8571242 |
ctaatttttgcactttcatttatataagaaagaatatcattcttgttctgagataggaatgagccaacaagcatatggaaggaactgtattagaaaagaa |
8571143 |
T |
|
| Q |
401 |
tgtcatcctaaagttccataaccat |
425 |
Q |
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||||||||||||||||||||||||| |
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| T |
8571142 |
tgtcatcctaaagttccataaccat |
8571118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 493 - 600
Target Start/End: Complemental strand, 8570620 - 8570513
Alignment:
| Q |
493 |
gaagaacgtctcagtataacccagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgatt |
592 |
Q |
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| T |
8570620 |
gaagaacgtctcagtataacgcagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgatt |
8570521 |
T |
|
| Q |
593 |
cacacgtt |
600 |
Q |
| |
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|||||||| |
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| T |
8570520 |
cacacgtt |
8570513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 8571579 - 8571491
Alignment:
| Q |
8 |
ccaagaatatcagtcttagtaagtaaatgaggacaaggataaagttgaaattttcaaactaattgaatcaatagttgccttcacaaaat |
96 |
Q |
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| T |
8571579 |
ccaaaaatatcagtcttagtaagtaaatgaggacaaggataaagttgaaattttcaaactaattgaatcaatagttgccttcacaaaat |
8571491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 296 - 425
Target Start/End: Complemental strand, 12020332 - 12020203
Alignment:
| Q |
296 |
ttgaactaatttttgcactttcatttatataagaaagaatatcattcttgttctgagataggaatgagccaacaagcatatggaaggaactgtattagaa |
395 |
Q |
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| T |
12020332 |
ttgaactaaattttgcacttaaatttatataagaaagaatagcaatcgtggtctgagataggaatgatgcaacaagcatatgaaaggatctgtatttgaa |
12020233 |
T |
|
| Q |
396 |
aagaatgtcatcctaaagttccataaccat |
425 |
Q |
| |
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| T |
12020232 |
aagaatgtcatcataaagttccttaaccat |
12020203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 514 - 594
Target Start/End: Complemental strand, 11989856 - 11989776
Alignment:
| Q |
514 |
cagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgattca |
594 |
Q |
| |
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| T |
11989856 |
cagaggaattcaatacaccgaaacaatgttttaaaaattacaaacacaaaggaattcaatatgcagcaacagagtgattca |
11989776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 8571097 - 8571053
Alignment:
| Q |
450 |
ggattcaatagaaataaacttcaagtagcaggtcattcttttgga |
494 |
Q |
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| T |
8571097 |
ggattcaatagaaataaacttcaagtagcaggtcattcttttgga |
8571053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 514 - 599
Target Start/End: Complemental strand, 29448209 - 29448124
Alignment:
| Q |
514 |
cagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgattcacacgt |
599 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| | || | || ||||||||| ||||| |
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| T |
29448209 |
cagaggaattcaatacaccggaacaatgttttaacaattaccaacacatagggattcaattttcagtgacagagtgattctcacgt |
29448124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 583
Target Start/End: Complemental strand, 29455508 - 29455442
Alignment:
| Q |
517 |
aggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaac |
583 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||| |||| |
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| T |
29455508 |
aggaattcaatacaccggattaatgttttaacaattacaaacacatagggattcaatttgcagtaac |
29455442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 599
Target Start/End: Original strand, 37458270 - 37458344
Alignment:
| Q |
523 |
tcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgattcacacgt |
599 |
Q |
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|||||||||| ||| |||||||||||||||| || | | |||||||||||||||| |||| |||||||||| |||| |
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| T |
37458270 |
tcaatacaccagaataatgttttaacaatta--aacaaaaagggattcaatatgcagtaacagagtgattcaaacgt |
37458344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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