View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0883_low_17 (Length: 313)
Name: NF0883_low_17
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0883_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 47016797 - 47016571
Alignment:
| Q |
1 |
cattgagaatgccatagtttctcaatgagtagataatggaaatgtaatcacttggaagatgtccagtttaccgatatgatgtctgaacaacttaacaaat |
100 |
Q |
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| T |
47016797 |
cattgagaatgccatagtttctcaatgagtagataatggaaatgtaatcacttggaagatgtccagtttaccgatatgatgtctgaacaacttaacaaat |
47016698 |
T |
|
| Q |
101 |
aagtcaggaaccaaaacagaaacaaaataatatagataaatcaacttcttaggccatctccaaaaggccatgttagcaacatgcctctaattaagcaaac |
200 |
Q |
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| T |
47016697 |
aagtcaggaaccaaaacagaaacaaaataatatagataaatcaacttcttaggccatctccaaaaggccatgttagcaacatgcctctaattaagcaaac |
47016598 |
T |
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| Q |
201 |
atatgttaggcacaaaaaacattgatg |
227 |
Q |
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| T |
47016597 |
atatgttaggcacaaaaaacattgatg |
47016571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 14466519 - 14466487
Alignment:
| Q |
168 |
ccatgttagcaacatgcctctaattaagcaaac |
200 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
14466519 |
ccatgttagcaacaagcctctaattaagcaaac |
14466487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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