View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0883_low_18 (Length: 307)
Name: NF0883_low_18
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0883_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 29405466 - 29405289
Alignment:
| Q |
22 |
catcatcaccttcctcataatcatcatcagaaaaatcttcctcatcacttaatatataccttgacccttccaaccccatctctctatcagtctcccctaa |
121 |
Q |
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| T |
29405466 |
catcttcaccttcctcataatcatcatcagaaaaatcttcctcatcacttaatatataccttgacccttccaaccccatctctctatcagtctcccctaa |
29405367 |
T |
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| Q |
122 |
caaatccatcaacgacatcgtcggaggtcc---tgcagcctcg------gcctcagcctccgctgcagcttctgctgc |
190 |
Q |
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| T |
29405366 |
caaatccatcaacgacatcgtcggaggtcctgttgcagcctcggcctcagcctcagcctccgctgcagcttctgctgc |
29405289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 29405152 - 29405055
Alignment:
| Q |
210 |
gacacgttggtggaattcttgcgtgatagttgtggtcgtagatttcctccgccagaattctcaggggaatctgccgtgaaccgagttgagctcccacg |
307 |
Q |
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| T |
29405152 |
gacacgttggtggaattcttgcgtgatagttgtggtcgtagatttcctccgccagaattctcagaggaatctgccgtgaaccgagttgagctcccacg |
29405055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 19911363 - 19911422
Alignment:
| Q |
57 |
tcttcctcatcacttaatatataccttgacccttccaaccccatctctctatcagtctcc |
116 |
Q |
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| T |
19911363 |
tcttcttcatcactcaaagtataccttgatccttccaatcccatctccctatcagtctcc |
19911422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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