View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0883_low_2 (Length: 639)

Name: NF0883_low_2
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0883_low_2
NF0883_low_2
[»] chr1 (19 HSPs)
chr1 (46-126)||(13536965-13537045)
chr1 (32-125)||(45597624-45597717)
chr1 (314-425)||(39394627-39394739)
chr1 (70-125)||(51609381-51609436)
chr1 (78-125)||(22425522-22425569)
chr1 (78-125)||(22862601-22862648)
chr1 (78-125)||(51129373-51129420)
chr1 (89-126)||(4530192-4530229)
chr1 (69-125)||(22424796-22424851)
chr1 (78-125)||(4530910-4530957)
chr1 (32-95)||(51987857-51987920)
chr1 (83-125)||(4626346-4626388)
chr1 (69-123)||(22861876-22861929)
chr1 (78-125)||(38620386-38620433)
chr1 (78-125)||(51132310-51132357)
chr1 (79-125)||(5101853-5101899)
chr1 (91-125)||(13536281-13536315)
chr1 (79-125)||(15373957-15374003)
chr1 (54-95)||(43755878-43755919)
[»] chr3 (26 HSPs)
chr3 (32-126)||(53714486-53714580)
chr3 (32-125)||(11266981-11267074)
chr3 (34-125)||(50304300-50304391)
chr3 (32-125)||(11267642-11267734)
chr3 (78-122)||(31891261-31891305)
chr3 (378-490)||(45730497-45730613)
chr3 (78-125)||(50305469-50305516)
chr3 (79-125)||(44993755-44993801)
chr3 (78-125)||(1127364-1127411)
chr3 (85-126)||(10343329-10343370)
chr3 (89-126)||(44384513-44384550)
chr3 (78-126)||(1128227-1128275)
chr3 (78-126)||(23379331-23379379)
chr3 (78-125)||(7359843-7359890)
chr3 (36-119)||(44385189-44385272)
chr3 (54-95)||(5113227-5113268)
chr3 (54-95)||(5113686-5113727)
chr3 (79-124)||(10344064-10344108)
chr3 (54-95)||(20586101-20586142)
chr3 (54-95)||(20586562-20586603)
chr3 (54-95)||(24394712-24394753)
chr3 (54-95)||(26006175-26006216)
chr3 (54-95)||(36992151-36992192)
chr3 (54-95)||(37017591-37017632)
chr3 (54-95)||(45000805-45000846)
chr3 (85-125)||(42996333-42996373)
[»] chr2 (16 HSPs)
chr2 (345-491)||(17909570-17909722)
chr2 (78-125)||(5141848-5141895)
chr2 (78-125)||(6198904-6198951)
chr2 (78-125)||(17946841-17946888)
chr2 (84-126)||(5142561-5142603)
chr2 (70-126)||(2992001-2992057)
chr2 (78-128)||(2992856-2992906)
chr2 (61-127)||(6197913-6197978)
chr2 (68-126)||(17947927-17947985)
chr2 (83-125)||(30902179-30902221)
chr2 (89-125)||(38065546-38065582)
chr2 (78-125)||(9370958-9371005)
chr2 (78-125)||(30901384-30901431)
chr2 (91-125)||(1442352-1442386)
chr2 (54-95)||(16903875-16903916)
chr2 (54-95)||(30899419-30899460)
[»] scaffold0070 (1 HSPs)
scaffold0070 (36-126)||(2666-2756)
[»] chr7 (20 HSPs)
chr7 (78-125)||(36661685-36661732)
chr7 (78-125)||(29511311-29511358)
chr7 (36-125)||(37693519-37693608)
chr7 (78-126)||(19431089-19431137)
chr7 (89-125)||(37692844-37692880)
chr7 (78-125)||(28868831-28868878)
chr7 (70-126)||(34368208-34368264)
chr7 (91-131)||(43551141-43551181)
chr7 (78-125)||(28869775-28869822)
chr7 (78-125)||(34367362-34367409)
chr7 (54-125)||(36662571-36662641)
chr7 (78-125)||(38315784-38315831)
chr7 (78-125)||(40905031-40905078)
chr7 (78-125)||(41712965-41713012)
chr7 (78-125)||(41713826-41713873)
chr7 (91-125)||(34827790-34827824)
chr7 (54-95)||(25137441-25137482)
chr7 (54-95)||(30414210-30414251)
chr7 (89-125)||(40905797-40905833)
chr7 (89-125)||(45761792-45761828)
[»] chr4 (17 HSPs)
chr4 (78-125)||(49708726-49708773)
chr4 (78-125)||(55879794-55879841)
chr4 (78-125)||(32893604-32893651)
chr4 (70-125)||(37142705-37142760)
chr4 (78-125)||(49346106-49346153)
chr4 (70-126)||(17978262-17978318)
chr4 (78-126)||(49708018-49708066)
chr4 (69-123)||(17088711-17088764)
chr4 (69-123)||(17096686-17096739)
chr4 (78-128)||(17979115-17979165)
chr4 (89-125)||(50708992-50709028)
chr4 (78-125)||(22255612-22255659)
chr4 (54-95)||(5235403-5235444)
chr4 (54-95)||(20174999-20175040)
chr4 (68-125)||(32894691-32894748)
chr4 (89-125)||(5826244-5826280)
chr4 (89-125)||(34956284-34956320)
[»] scaffold0161 (2 HSPs)
scaffold0161 (378-426)||(27070-27118)
scaffold0161 (378-426)||(7976-8024)
[»] chr8 (10 HSPs)
chr8 (32-125)||(5432845-5432934)
chr8 (53-125)||(45163093-45163165)
chr8 (78-125)||(511444-511491)
chr8 (78-125)||(8491468-8491515)
chr8 (78-126)||(788473-788521)
chr8 (91-125)||(29184190-29184224)
chr8 (91-125)||(35237965-35237999)
chr8 (78-116)||(45162251-45162289)
chr8 (89-126)||(8492454-8492491)
chr8 (61-125)||(510453-510516)
[»] chr6 (10 HSPs)
chr6 (351-422)||(34355342-34355414)
chr6 (78-125)||(1528561-1528608)
chr6 (78-125)||(6841957-6842004)
chr6 (78-123)||(1529412-1529457)
chr6 (69-125)||(6841232-6841287)
chr6 (78-125)||(18483124-18483171)
chr6 (54-95)||(7635153-7635194)
chr6 (54-95)||(7635613-7635654)
chr6 (54-95)||(18290244-18290285)
chr6 (54-95)||(18290473-18290514)
[»] chr5 (16 HSPs)
chr5 (78-124)||(18669867-18669913)
chr5 (69-126)||(19855054-19855110)
chr5 (78-125)||(6353684-6353731)
chr5 (78-125)||(19854336-19854383)
chr5 (70-125)||(39950326-39950381)
chr5 (78-128)||(41784619-41784669)
chr5 (86-128)||(41785491-41785533)
chr5 (88-125)||(6354696-6354733)
chr5 (78-129)||(1282250-1282301)
chr5 (78-125)||(39949492-39949539)
chr5 (54-95)||(3595806-3595847)
chr5 (54-95)||(7858356-7858397)
chr5 (54-95)||(8321365-8321406)
chr5 (54-95)||(12330177-12330218)
chr5 (54-95)||(12330640-12330681)
chr5 (85-126)||(30003574-30003615)
[»] scaffold0041 (2 HSPs)
scaffold0041 (78-125)||(44940-44987)
scaffold0041 (89-125)||(44185-44221)
[»] scaffold1052 (2 HSPs)
scaffold1052 (79-125)||(1568-1614)
scaffold1052 (78-126)||(329-377)
[»] scaffold0508 (1 HSPs)
scaffold0508 (54-95)||(4162-4203)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 13536965 - 13537045
Alignment:
Q  46 ggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13536965 ggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 13537045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 45597717 - 45597624
Alignment:
Q  32 tatgataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||||||||||||||||||||| ||   ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45597717 tatgataatactatggtctttctttgatccaaccattaaaaagtatctttcctatggtgggaaattctttccctcacccaccctaaatgccacc 45597624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 39394627 - 39394739
Alignment:
Q  314 tttttatagatttaggcgtctttgcgtttaggaccagtttcttggtgcaaccttttgtat-tatatttcttttgataacaatgttctctatgatttgtca 412  Q
    |||||||||||||||  | | ||||| ||||||||| ||||||||||||| ||||||||| | | |||||||||| | |  |||||| ||||||||||||    
T  39394627 tttttatagatttagcggaccttgcgcttaggaccaatttcttggtgcaagcttttgtatatttgtttcttttgacatcggtgttctttatgatttgtca 39394726  T
Q  413 tttttattgtgtt 425  Q
    |||||||||||||    
T  39394727 tttttattgtgtt 39394739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 51609436 - 51609381
Alignment:
Q  70 aaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  51609436 aaaaatatctttcccatgttgagaaactctttccctcacccaccctaaatgccacc 51609381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 22425522 - 22425569
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22425522 ctttcctatggtgggaaattctttccctcacccatcctaaatgccacc 22425569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 22862601 - 22862648
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22862601 ctttcctatggtgggaaattctttccctcacccatcctaaatgccacc 22862648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 51129420 - 51129373
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  51129420 ctttcccatagtgggaaactctttccctcacccaccctaaatgccacc 51129373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 4530229 - 4530192
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4530229 tgggaaattctttccctcacccaccctaaatgccacca 4530192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 22424851 - 22424796
Alignment:
Q  69 aaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  22424851 aaaaaata-ctttcctatgatggggaattctttccctcacccaccctaaatgccacc 22424796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 4530910 - 4530957
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  4530910 ctttcccattgtggggaattctttccctcacccaccctaaataccacc 4530957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 51987920 - 51987857
Alignment:
Q  32 tatgataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||| |||||||| | |||||||||||| ||||||||   ||||||||||||||||||    
T  51987920 tatgataatattatggtctatatttgatctaatggttaaaaaaatactttcccatggtgggaaa 51987857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 4626346 - 4626388
Alignment:
Q  83 ccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  4626346 ccatggtgggaaattttttccctctcccaccctaaatgccacc 4626388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 22861929 - 22861876
Alignment:
Q  69 aaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgcca 123  Q
    |||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||    
T  22861929 aaaaaata-ctttcctatgatggggaattctttccctcacccaccctaaatgcca 22861876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 38620386 - 38620433
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||| |||||| |||||| |||| |||||||||||||||||    
T  38620386 ctttcccatggagggaaactctttcactcatccaccctaaatgccacc 38620433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 51132310 - 51132357
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||||||| ||||||||||| |||||||||||| ||||    
T  51132310 ctttctcatggtgggaaactctttccctcatccaccctaaatgtcacc 51132357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 5101853 - 5101899
Alignment:
Q  79 tttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||||||| || ||||| ||| |||||||||||||||||||    
T  5101853 tttcccatggtgggtaactctttaccttacccaccctaaatgccacc 5101899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 13536315 - 13536281
Alignment:
Q  91 ggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||||||||||||||||||||||||    
T  13536315 ggaaactctttccctcacccaccctaaatgccacc 13536281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 15374003 - 15373957
Alignment:
Q  79 tttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||||||||| ||||||||   ||||||||||||||||||    
T  15374003 tttcccatggtgggaaaatctttccccatcccaccctaaatgccacc 15373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 43755919 - 43755878
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  43755919 tttgatctaatggttaaaaactaactttcccatggtgggaaa 43755878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 53714580 - 53714486
Alignment:
Q  32 tatgataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||||||||||||||||||||||||| ||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53714580 tatgataatactatggtctttctttgatccaaccgttaaaaagtatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 53714486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 11267074 - 11266981
Alignment:
Q  32 tatgataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||    
T  11267074 tatgataatactatggtctttctttgatctagtgcttaaaaaatatctttctcatggtgggaaattctttccttcatctaccctaaatgccacc 11266981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 50304391 - 50304300
Alignment:
Q  34 tgataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| || ||||||| || |||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  50304391 tgatattattatggtccttttttgatctaatggttaaaaaatatcttttctatggtgggaaattatttccctcacccaccctaaatgccacc 50304300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 11267642 - 11267734
Alignment:
Q  32 tatgataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||| | |||| ||||| ||| |||||||| ||||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  11267642 tatgataagagtatgctctttatttaatctaatggttaaaatttat-tttcccatggtaggaaattctttccctcacccaccctaaatgccacc 11267734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 31891305 - 31891261
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgcc 122  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  31891305 ctttcccatggagggaaattctttccctcacccaccctaaatgcc 31891261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 490
Target Start/End: Complemental strand, 45730613 - 45730497
Alignment:
Q  378 tttcttttgataacaatgttctctatgatttgtcatttttattgtg----ttttctcctttcattactttcactaaatttaatctatgatgttgtttcca 473  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||    ||| |  |||| |||| || ||||||||||||| |||||| ||| |||||    
T  45730613 tttcttttgattacaacgttctttatgatttgtcatttttattgtgttcatttccagctttgattagttccactaaatttaatttatgattttgattcca 45730514  T
Q  474 tactcatttgtgttgat 490  Q
    || | |||| |||||||    
T  45730513 tatttatttttgttgat 45730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 50305469 - 50305516
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  50305469 cttttccatggtgggaaattcttttcctcacccaccctaaatgccacc 50305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 44993755 - 44993801
Alignment:
Q  79 tttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  44993755 tttcccatggtaggaaactctttccctcacccaccctaaatgccacc 44993801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 1127411 - 1127364
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||||    
T  1127411 ctttctcatggtgggaaactttttccctcacccaccctaaatgccacc 1127364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 10343370 - 10343329
Alignment:
Q  85 atggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  10343370 atggtggaaaaatctttccctcacccaccctaaatgccacca 10343329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 44384550 - 44384513
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44384550 tgggaaattcttttcctcacccaccctaaatgccacca 44384513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 1128227 - 1128275
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||||| ||| |||| |||||| |||||||||||||||||||||||    
T  1128227 ctttcccatagtgagaaactctttctctcacccaccctaaatgccacca 1128275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 23379379 - 23379331
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||||| || |||||||| ||||||||| ||||||||||||||||||||    
T  23379379 ctttcctatagtgggaaaatctttcccttacccaccctaaatgccacca 23379331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 7359843 - 7359890
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||||||||||| |||| | || |||||||||||||||||||    
T  7359843 ctttcccatggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 44385189 - 44385272
Alignment:
Q  36 ataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaat 119  Q
    |||| |||||||||||  ||||||||||   ||| |||  | ||||||||| ||||| |||||||||||||||||| |||||||    
T  44385189 ataaaactatggtcttcatttgatctaagagttataaatcaactttcccattgtggggaattctttccctcacccatcctaaat 44385272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 5113268 - 5113227
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  5113268 tttgatctaatggttaaaaactaactttcccatggtgggaaa 5113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 5113686 - 5113727
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  5113686 tttgatctaatggttaaaaactaactttcccatggtgggaaa 5113727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 10344064 - 10344108
Alignment:
Q  79 tttcccatggtgggaaattctttccctcacccaccctaaatgccac 124  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  10344064 tttcccatggtgg-aaattttttccctcacccaccctaaattccac 10344108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 20586142 - 20586101
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  20586142 tttgatctaatggttaaaaactaactttcccatggtgggaaa 20586101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 20586562 - 20586603
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  20586562 tttgatctaatggttaaaaactaactttcccatggtgggaaa 20586603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 24394712 - 24394753
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  24394712 tttgatctaatggttaaaaactaactttcccatggtgggaaa 24394753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 26006216 - 26006175
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  26006216 tttgatctaatggttaaaaactaactttcccatggtgggaaa 26006175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 36992151 - 36992192
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  36992151 tttgatctaatggttaaaaactaactttcccatggtgggaaa 36992192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 37017591 - 37017632
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  37017591 tttgatctaatggttaaaaactaactttcccatggtgggaaa 37017632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 45000805 - 45000846
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  45000805 tttgatctaatggttaaaaactaactttcccatggtgggaaa 45000846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 42996333 - 42996373
Alignment:
Q  85 atggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||| ||||||||| ||||| |||||||||||||    
T  42996333 atggtgggaaaatctttcccttacccatcctaaatgccacc 42996373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 345 - 491
Target Start/End: Original strand, 17909570 - 17909722
Alignment:
Q  345 gaccagtttcttggtgcaaccttttgtattatatttc-ttttgataacaatgttctctatgatttgtcatttttattgtg----ttttctcctttcatta 439  Q
    ||||| ||||||||||||  |||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||    ||||| ||||||||||    
T  17909570 gaccaatttcttggtgcagacttttgtatattttttccttttgataacaatgttctctatgatttgtcatttttattgtgttgattttcacctttcatta 17909669  T
Q  440 ctttcactaaatttaatctatgatgttg-tttccatactcatttgtgttgatg 491  Q
    |||||||| |||||||| |||||  ||| |||||||| |||||| ||||||||    
T  17909670 ctttcactgaatttaatttatgactttgatttccatattcatttttgttgatg 17909722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 5141895 - 5141848
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  5141895 ctttcccatgatggggaattctttccctcacccaccctaaatgccacc 5141848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 6198904 - 6198951
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||    
T  6198904 ctttcctatgatgggaaattctttccctcacccaccctaaatgccacc 6198951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 17946888 - 17946841
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17946888 ctttcccatgatggaaaattctttccctcacccaccctaaatgccacc 17946841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 5142561 - 5142603
Alignment:
Q  84 catggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  5142561 catggtggaaaattctttccctcacccaccctaaatgccacca 5142603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 2992057 - 2992001
Alignment:
Q  70 aaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||| |||||||||| ||||||| |||||||| | |||||||||||||||||||    
T  2992057 aaaaataactttcccatgttgggaaactctttcccccgcccaccctaaatgccacca 2992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 2992856 - 2992906
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccaccaca 128  Q
    |||| |||| |||| ||| ||||||||||||||||||||||||||||||||    
T  2992856 cttttccatagtggaaaactctttccctcacccaccctaaatgccaccaca 2992906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 6197978 - 6197913
Alignment:
Q  61 taatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccaccac 127  Q
    ||||| ||||||| || |||||||||  |||| |||||||||||| |||||||||||||||||||||    
T  6197978 taatggttaaaaacta-ctttcccataatggggaattctttcccttacccaccctaaatgccaccac 6197913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 17947927 - 17947985
Alignment:
Q  68 taaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||| | || |||||| |||||||| ||||||||||||||| ||||||||||||||    
T  17947927 taaaaaaaaactctcccatagtgggaaactctttccctcacccatcctaaatgccacca 17947985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 30902179 - 30902221
Alignment:
Q  83 ccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  30902179 ccatggtaggaaactctttccctcacccaccctaaatgccacc 30902221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 38065582 - 38065546
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| |||||||||||||||||||||||||||||    
T  38065582 tgggaaactctttccctcacccaccctaaatgccacc 38065546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 9371005 - 9370958
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| || || |||||||||||| |||||||||||||||||||    
T  9371005 ctttcccatagtagggaattctttcccttacccaccctaaatgccacc 9370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 30901431 - 30901384
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||||| ||||| |||| ||||||||||||||||||||||||    
T  30901431 ctttcctatggtaggaaactcttgccctcacccaccctaaatgccacc 30901384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 1442386 - 1442352
Alignment:
Q  91 ggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||||||||||||||||||||||||    
T  1442386 ggaaactctttccctcacccaccctaaatgccacc 1442352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 16903875 - 16903916
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  16903875 tttgatctaatggttaaaaactaactttcccatggtgggaaa 16903916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 30899460 - 30899419
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  30899460 tttgatctaatggttaaaaactaactttcccatggtgggaaa 30899419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 2666 - 2756
Alignment:
Q  36 ataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||||||||| |||| |||||  |||  ||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  2666 ataatactatggtttttcgttgataaaatagttaaaaaatatatttaccatggtggggaattctttccctcaccaaccctaaatgccacca 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 36661732 - 36661685
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36661732 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 36661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 29511358 - 29511311
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29511358 cttttccatggtgagaaattctttccctcacccaccctaaatgccacc 29511311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 37693519 - 37693608
Alignment:
Q  36 ataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||||||||||  ||||||||||   ||| |||  | ||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  37693519 ataaaactatggtcttcatttgatctaagagttataaatcaactttcccattgtggggaattctttccctcacccaccctaaataccacc 37693608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 19431137 - 19431089
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  19431137 ctttcccatcatgggaaactctttccctcacccaccctaaatgccacca 19431089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 37692880 - 37692844
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||||||||||||||||||||||||||||||    
T  37692880 tgggaaattctttccctcacccaccctaaatgccacc 37692844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 28868878 - 28868831
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||    
T  28868878 cttttccatggaggaaaattctttccctcacccaccctaaatgccacc 28868831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 34368208 - 34368264
Alignment:
Q  70 aaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||| |||||||||| ||| ||| |||||||| | |||||||||||||||||||    
T  34368208 aaaaataactttcccatgttggaaaactctttcccccgcccaccctaaatgccacca 34368264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 43551181 - 43551141
Alignment:
Q  91 ggaaattctttccctcacccaccctaaatgccaccacaaca 131  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  43551181 ggaaactctttccctcacccaccctaaatgccaccccaaca 43551141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 28869775 - 28869822
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  28869775 ctttcctatgatgggaaaatctttccatcacccaccctaaatgccacc 28869822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 34367409 - 34367362
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||| |||| ||| |||||||||||||||||||||||||||||    
T  34367409 cttttccatagtggaaaactctttccctcacccaccctaaatgccacc 34367362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 36662571 - 36662641
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||||| ||||||| || |||||||||   |||||| |||| || |||||||||||||||||||||    
T  36662571 tttgatctaatgattaaaaatta-ctttcccatatcgggaaactcttcccttcacccaccctaaatgccacc 36662641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 38315831 - 38315784
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||| || ||||| |||||||||||||||||||||||||||||    
T  38315831 cttttccatagtaggaaactctttccctcacccaccctaaatgccacc 38315784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 40905078 - 40905031
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  40905078 ctttcccatagtaggaaactctttgcctcacccaccctaaatgccacc 40905031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 41713012 - 41712965
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| ||| |||| |||||| ||||||||||||||||||||||    
T  41713012 ctttcccatagtgagaaactctttctctcacccaccctaaatgccacc 41712965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 41713826 - 41713873
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||| ||| | |||||||||||||||||||||||||||    
T  41713826 ctttctcatggtggaaaactttttccctcacccaccctaaatgccacc 41713873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 34827790 - 34827824
Alignment:
Q  91 ggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||||||||||||||||||||||||    
T  34827790 ggaaactctttccctcacccaccctaaatgccacc 34827824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 25137482 - 25137441
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  25137482 tttgatctaatggttaaaaactaactttcccatggtgggaaa 25137441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 30414251 - 30414210
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  30414251 tttgatctaatggttaaaaactaactttcccatggtgggaaa 30414210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 40905797 - 40905833
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  40905797 tgggaaactctttgcctcacccaccctaaatgccacc 40905833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 45761828 - 45761792
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||||||||| |||||||||||||||||||||    
T  45761828 tggggaattctttccttcacccaccctaaatgccacc 45761792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 49708726 - 49708773
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  49708726 cttttccatggtgggaaattctttccctcacccaccctaaatgccacc 49708773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 55879841 - 55879794
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  55879841 ctttcccatggtgggaaattatttccctcacccaccctaaatgccacc 55879794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 32893651 - 32893604
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  32893651 ctttcccatgatggaaaattctttccctcacccaccctaaatgccacc 32893604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 37142705 - 37142760
Alignment:
Q  70 aaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  37142705 aaaaataactttcccatgttgggaaactctttcccccacccaccctaaatgccacc 37142760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 49346153 - 49346106
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  49346153 ctttcccatgatggaaaattctttccctcacccaccctaaatgccacc 49346106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 17978318 - 17978262
Alignment:
Q  70 aaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||| |||||||||| ||||||| |||||||| | |||||||||||||||||||    
T  17978318 aaaaataactttcccatgttgggaaactctttcccccgcccaccctaaatgccacca 17978262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 49708066 - 49708018
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  49708066 cttttccatgatggggaattctttccctcacccaccctaaatgccacca 49708018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 17088711 - 17088764
Alignment:
Q  69 aaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgcca 123  Q
    |||||||| |||||| |||||||  ||||||||||||||||||||||||||||||    
T  17088711 aaaaaata-ctttcctatggtggagaattctttccctcacccaccctaaatgcca 17088764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 17096686 - 17096739
Alignment:
Q  69 aaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgcca 123  Q
    |||||||| |||||| |||||||  ||||||||||||||||||||||||||||||    
T  17096686 aaaaaata-ctttcctatggtggagaattctttccctcacccaccctaaatgcca 17096739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 17979115 - 17979165
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccaccaca 128  Q
    |||| |||| |||| ||| ||||||||||||||||||||||||||||||||    
T  17979115 cttttccatagtggaaaactctttccctcacccaccctaaatgccaccaca 17979165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 50709028 - 50708992
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||||||| |||||||||||||||||||||||    
T  50709028 tgggaaattctttgcctcacccaccctaaatgccacc 50708992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 22255659 - 22255612
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||||||||| |||  |||||||||||||||||||||| |||||    
T  22255659 ctttcccatggtggaaaaagctttccctcacccaccctaaattccacc 22255612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 5235444 - 5235403
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  5235444 tttgatctaatggttaaaaactaactttcccatggtgggaaa 5235403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 20175040 - 20174999
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  20175040 tttgatctaatggttaaaaactaactttcccatggtgggaaa 20174999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 32894691 - 32894748
Alignment:
Q  68 taaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| | || |||||| || ||||| ||||||||||||||| |||||||||||||    
T  32894691 taaaaaaaaactctcccatagtaggaaactctttccctcacccatcctaaatgccacc 32894748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 5826244 - 5826280
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  5826244 tgggaaactctttccctcacccaccctaaatgtcacc 5826280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 34956320 - 34956284
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  34956320 tgggaaactctttgcctcacccaccctaaatgccacc 34956284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 27118 - 27070
Alignment:
Q  378 tttcttttgataacaatgttctctatgatttgtcatttttattgtgttt 426  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  27118 tttcttttgattacaatgttctctatgatttatcatttttattgtgttt 27070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 8024 - 7976
Alignment:
Q  378 tttcttttgataacaatgttctctatgatttgtcatttttattgtgttt 426  Q
    ||||||||||| |||||||||  |||||||| ||||||||||| |||||    
T  8024 tttcttttgattacaatgttccgtatgatttatcatttttattatgttt 7976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 5432934 - 5432845
Alignment:
Q  32 tatgataatactatggtctttctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| ||| || |||||| |||||||||||| || |||| ||||||||    | || ||||||||||||||||||||||||||||||||||    
T  5432934 tatgatattaccatagtctttatttgatctaatggtttaaaagtatctttc----gatgagaaattctttccctcacccaccctaaatgccacc 5432845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 45163093 - 45163165
Alignment:
Q  53 ctttgatctaatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||||||| | || ||| | |||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  45163093 ctttaatctaatggtaaacaaacaactttcctatgatgggaaaatctttccctcacccaccctaaatgccacc 45163165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 511444 - 511491
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  511444 ctttcctatgatgggaaattctttccttcacccaccctaaatgccacc 511491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 8491515 - 8491468
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||    
T  8491515 ctttcctatagtgggaaaatctttccctcacccaccctaaatgccacc 8491468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 788473 - 788521
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||||||||  ||||||| |||||||||||||||||||||||| |||||    
T  788473 ctttcccatcatgggaaactctttccctcacccaccctaaatgtcacca 788521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 29184224 - 29184190
Alignment:
Q  91 ggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||||||||||||||||||||||||    
T  29184224 ggaaactctttccctcacccaccctaaatgccacc 29184190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 35237999 - 35237965
Alignment:
Q  91 ggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||||||||||||||||||||||||    
T  35237999 ggaaactctttccctcacccaccctaaatgccacc 35237965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 45162289 - 45162251
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccacccta 116  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  45162289 ctttcctatggagggaaattctttccctcacccacccta 45162251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 8492454 - 8492491
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  8492454 tgggaaaatctttccctcacccatcctaaatgccacca 8492491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 510516 - 510453
Alignment:
Q  61 taatgcttaaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| ||||||| || |||||||||  |||| |||||||||||| |||||| ||||||||||||    
T  510516 taatggttaaaaacta-ctttcccataatggggaattctttcccttacccactctaaatgccacc 510453  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 34355414 - 34355342
Alignment:
Q  351 tttcttggtgcaaccttttgtattatattt-cttttgataacaatgttctctatgatttgtcatttttattgt 422  Q
    ||||||||||||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||||| |||||    
T  34355414 tttcttggtgcaaacttttgtatattattttcttttgattacaatgttctctatgatttatcattttaattgt 34355342  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 1528608 - 1528561
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  1528608 ctttcccatagtgggaaactctttccctcacccaccctaaatgccacc 1528561  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 6841957 - 6842004
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  6841957 ctttcctatggtgggaaattctttccctcacccatcctaaatgccacc 6842004  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 1529412 - 1529457
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgcca 123  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||    
T  1529412 ctttctcatggtgggaaactctttccctcacccaccctaaatgcca 1529457  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 6841287 - 6841232
Alignment:
Q  69 aaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  6841287 aaaaaata-ctttcctatgatggggaattctttccctcacccaccctaaatgccacc 6841232  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 18483124 - 18483171
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| |||| ||| ||||||| |||||||||||||||||||||    
T  18483124 ctttcccatagtggtaaactctttccgtcacccaccctaaatgccacc 18483171  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 7635194 - 7635153
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  7635194 tttgatctaatggttaaaaactaactttcccatggtgggaaa 7635153  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 7635613 - 7635654
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  7635613 tttgatctaatggttaaaaactaactttcccatggtgggaaa 7635654  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 18290285 - 18290244
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  18290285 tttgatctaatggttaaaaattaactttcccatggtgggaaa 18290244  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 18290473 - 18290514
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  18290473 tttgatctaatggttaaaaactaactttcccatggtgggaaa 18290514  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 18669913 - 18669867
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccac 124  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  18669913 ctttctcatggtgggaaactctttccctcacccaccctaaatgccac 18669867  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 19855054 - 19855110
Alignment:
Q  69 aaaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  19855054 aaaaaata-ctttcctatgatggggaattctttccctcacccaccctaaatgccacca 19855110  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 6353731 - 6353684
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  6353731 ctttcctatgatgggaaaatctttccctcacccaccctaaatgccacc 6353684  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 19854383 - 19854336
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||    
T  19854383 ctttcctatggtgggaaattctttccctcacccattctaaatgccacc 19854336  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 39950326 - 39950381
Alignment:
Q  70 aaaaatatctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| |||||||||| ||||||| |||||||| | ||||||||||||||||||    
T  39950326 aaaaataactttcccatgttgggaaactctttcccccgcccaccctaaatgccacc 39950381  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 41784669 - 41784619
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccaccaca 128  Q
    ||||||||| || | ||| ||||||||||||||||||||||||||||||||    
T  41784669 ctttcccatagtagaaaactctttccctcacccaccctaaatgccaccaca 41784619  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 41785491 - 41785533
Alignment:
Q  86 tggtgggaaattctttccctcacccaccctaaatgccaccaca 128  Q
    ||||| |||| ||||||||||||||||||||||||||||||||    
T  41785491 tggtgagaaactctttccctcacccaccctaaatgccaccaca 41785533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 6354696 - 6354733
Alignment:
Q  88 gtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||||||| |||||||||||||||||||||||||||||    
T  6354696 gtgggaaaatctttccctcacccaccctaaatgccacc 6354733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 1282301 - 1282250
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccaccacaa 129  Q
    ||||||||| |||||||| ||||||||   ||||||||||||||||||||||    
T  1282301 ctttcccatagtgggaaactctttcccattcccaccctaaatgccaccacaa 1282250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 39949539 - 39949492
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    |||| |||| |||| ||| |||||||||||||||||||||||||||||    
T  39949539 cttttccatagtggaaaactctttccctcacccaccctaaatgccacc 39949492  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 3595847 - 3595806
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  3595847 tttgatctaatggttaaaaactaactttcccatggtgggaaa 3595806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 7858397 - 7858356
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  7858397 tttgatctaatggttaaaaactaactttcccatggtgggaaa 7858356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 8321365 - 8321406
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  8321365 tttgatctaatggttaaaaactaactttcccatggtgggaaa 8321406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 12330218 - 12330177
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  12330218 tttgatctaatggttaaaaattaactttcccatggtgggaaa 12330177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 12330640 - 12330681
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  12330640 tttgatctaatggttaaaaactaactttcccatggtgggaaa 12330681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 30003574 - 30003615
Alignment:
Q  85 atggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||    
T  30003574 atggtaggaaactctttcccttacccaccctaaatgccacca 30003615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 44940 - 44987
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  44940 ctttcccatagtaggaaactctttgcctcacccaccctaaatgccacc 44987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 44221 - 44185
Alignment:
Q  89 tgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  44221 tgggaaactctttgcctcacccaccctaaatgccacc 44185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 1568 - 1614
Alignment:
Q  79 tttcccatggtgggaaattctttccctcacccaccctaaatgccacc 125  Q
    ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  1568 tttccaatggtgggtaactctttcccttacccaccctaaatgccacc 1614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 377 - 329
Alignment:
Q  78 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 126  Q
    |||||| ||||||||||| ||||| ||| |||||||||||||| |||||    
T  377 ctttcctatggtgggaaaatcttttccttacccaccctaaatgtcacca 329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 4203 - 4162
Alignment:
Q  54 tttgatctaatgcttaaaaaatatctttcccatggtgggaaa 95  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  4203 tttgatctaatggttaaaaactaactttcccatggtgggaaa 4162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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