View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0883_low_22 (Length: 275)
Name: NF0883_low_22
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0883_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 31835543 - 31835454
Alignment:
| Q |
174 |
aagtattgcttaggtatttagattttgtaaattacttcacttattggagtatggtcaaatctctttttagtacttcttccatcctatatt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| | ||||||| |
|
|
| T |
31835543 |
aagtattgcttaggtatttagattttgtaaattacttcgcttattggagtatggtcatatttctttttagtacttcttccgttctatatt |
31835454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 31835682 - 31835611
Alignment:
| Q |
36 |
aaatttagtggcgatcgaaaattatctaccaacaagtctagaaaggtttttaaaat-ggagggtgaataatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31835682 |
aaatttagtggcgatcgaaaattatctaccaacaagtctagaaaggtttttaaaatgggagggtgaataatg |
31835611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 532 times since January 2019
Visitors: 6717