View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0883_low_28 (Length: 251)

Name: NF0883_low_28
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0883_low_28
NF0883_low_28
[»] chr2 (3 HSPs)
chr2 (21-251)||(26268954-26269184)
chr2 (21-155)||(10927389-10927523)
chr2 (171-208)||(30438104-30438141)
[»] scaffold0176 (1 HSPs)
scaffold0176 (21-155)||(26095-26229)
[»] chr3 (2 HSPs)
chr3 (21-140)||(25477522-25477641)
chr3 (23-139)||(25626856-25626972)
[»] chr7 (4 HSPs)
chr7 (23-140)||(5236470-5236587)
chr7 (24-86)||(19334812-19334874)
chr7 (31-93)||(44712653-44712715)
chr7 (172-208)||(30450234-30450270)
[»] chr5 (3 HSPs)
chr5 (23-165)||(20116816-20116958)
chr5 (21-167)||(31056695-31056841)
chr5 (21-86)||(31042789-31042854)
[»] chr1 (2 HSPs)
chr1 (108-167)||(12864701-12864759)
chr1 (23-126)||(16761436-16761539)
[»] chr4 (1 HSPs)
chr4 (23-84)||(13069527-13069588)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 26269184 - 26268954
Alignment:
Q  21 acatcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  26269184 acatcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttaggatctagattttcaataa 26269085  T
Q  121 tgtacatatcttcgtcatctactaccacctcataatcggccgcccgatagggggtgtgcaaattgattatccaaattgaaccatactattatgataaata 220  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  26269084 tgtacagatcttcgtcatctactaccacctcataatctgccgcccgatagggggtgtgcaaatggattatccaaactgaaccatactattatgataaata 26268985  T
Q  221 gtgaatgttgtgaatacttgaaaatgtgaat 251  Q
    |||||||||||||||||||||||| ||||||    
T  26268984 gtgaatgttgtgaatacttgaaaaggtgaat 26268954  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 10927523 - 10927389
Alignment:
Q  21 acatcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataa 120  Q
    |||||||||||||||||  | ||||| |||||||||||||||||||| ||||| |||||||||||||| || | |||||  || |  | |||| ||||||    
T  10927523 acatcatcaagattaaaattttcatccttttcaatcttcacaccatcttcaaccttcttctcagcaacaactttctcttcaggattaaaatttgcaataa 10927424  T
Q  121 tgtacatatcttcgtcatctactaccacctcataa 155  Q
    |||||| ||||||||||| | | | ||||||||||    
T  10927423 tgtacaaatcttcgtcatatccaatcacctcataa 10927389  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 30438104 - 30438141
Alignment:
Q  171 ggggtgtgcaaattgattatccaaattgaaccatacta 208  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  30438104 ggggtgtgcaaatggattatccaaactgaaccatacta 30438141  T

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Target: scaffold0176 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 26095 - 26229
Alignment:
Q  21 acatcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataa 120  Q
    |||| |||||||||||| || ||||| ||||| ||||||||| |||| |  || ||||||||| ||||||||| |||||| || || |||||||||||||    
T  26095 acattatcaagattaaaactttcatccttttccatcttcacatcatctttgactttcttctcaacaactaccttctctttaggatcaagattttcaataa 26194  T
Q  121 tgtacatatcttcgtcatctactaccacctcataa 155  Q
    |||||| |||||| |||||| ||| ||||||||||    
T  26195 tgtacaaatcttcttcatctcctatcacctcataa 26229  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 25477522 - 25477641
Alignment:
Q  21 acatcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataa 120  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||| |||   || |||||| |||| ||||  ||||| || || |||||||||||||    
T  25477522 acattatcaagattaaagctatctcctttttcaatcttcacaccatcttcagtcttattctcatcaacaaccttatcttttggatcgagattttcaataa 25477621  T
Q  121 tgtacatatcttcgtcatct 140  Q
    |||||| ||||| |||||||    
T  25477622 tgtacaaatcttggtcatct 25477641  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 25626972 - 25626856
Alignment:
Q  23 atcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataatg 122  Q
    ||||||||||||||||||||| || ||||||| ||||||||| || ||| | |||||| ||||||| || |  || |  || || ||||||||||| |||    
T  25626972 atcatcaagattaaagctatcttccttttcaagcttcacaccgtcttcagccttcttcccagcaacaacattttcatctggatcaagattttcaattatg 25626873  T
Q  123 tacatatcttcgtcatc 139  Q
    |||| ||||| ||||||    
T  25626872 tacaaatcttggtcatc 25626856  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 5236470 - 5236587
Alignment:
Q  23 atcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataatg 122  Q
    |||||||| |||||||||||| || |||||||||||||||||||| ||||| ||||||  |||||  ||||  ||||  || || |||||||||||||||    
T  5236470 atcatcaacattaaagctatcttccttttcaatcttcacaccatcttcaaccttcttcctagcaaagaccttttcttctggatcaagattttcaataatg 5236569  T
Q  123 tacatatcttcgtcatct 140  Q
    |||| ||||| |||||||    
T  5236570 tacaaatcttggtcatct 5236587  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 19334812 - 19334874
Alignment:
Q  24 tcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagca 86  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||| ||||| ||||||| ||||    
T  19334812 tcatcaagattaaagctttcatcatttttaatcttcacaccatcttcaaccttcttcttagca 19334874  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 44712715 - 44712653
Alignment:
Q  31 gattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacct 93  Q
    |||||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||| ||||    
T  44712715 gattaaagttatcttctttttcaatcttcacaccatcttcaaccttcttcccagcaacgacct 44712653  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 30450270 - 30450234
Alignment:
Q  172 gggtgtgcaaattgattatccaaattgaaccatacta 208  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  30450270 gggtgtgcaaatggattatccaaactgaaccatacta 30450234  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 20116958 - 20116816
Alignment:
Q  23 atcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataatg 122  Q
    |||||||||||||||||| ||||| |||||||||||||| | |||   ||| ||||| |||||||  || | ||||| ||| || |||||||||| || |    
T  20116958 atcatcaagattaaagctttcatccttttcaatcttcaccctatctctaaccttcttatcagcaatgactttctcttcgggatcaagattttcaacaaag 20116859  T
Q  123 tacatatcttcgtcatctactaccacctcataatcggccgccc 165  Q
    |||| ||||  ||||||| |||| ||||||| ||| |||||||    
T  20116858 tacaaatctcggtcatctcctacaacctcatgatccgccgccc 20116816  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 31056695 - 31056841
Alignment:
Q  21 acatcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataa 120  Q
    ||||||||||| ||| |||| | ||| |||||||||||||||||||| ||||| ||||||||| || | | || || |   || |  |||||||||||||    
T  31056695 acatcatcaaggttatagcttttatcattttcaatcttcacaccatcttcaaccttcttctcaacatcaagcttctttacaggattaagattttcaataa 31056794  T
Q  121 tgtacatatcttcgtcatctactaccacctcataatcggccgcccga 167  Q
    |||||| |||||| ||||||  || |||||||||| | |||||||||    
T  31056795 tgtacaaatcttcatcatctcttatcacctcataacctgccgcccga 31056841  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 31042789 - 31042854
Alignment:
Q  21 acatcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagca 86  Q
    ||||||||||||||| |||| | ||| |||||||||||||||||||| ||||| ||||||||||||    
T  31042789 acatcatcaagattatagcttttatcattttcaatcttcacaccatcttcaaccttcttctcagca 31042854  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 12864701 - 12864759
Alignment:
Q  108 agattttcaataatgtacatatcttcgtcatctactaccacctcataatcggccgcccga 167  Q
    |||||||||||||||||||| |||||||||||| ||| |||||| | ||| |||||||||    
T  12864701 agattttcaataatgtacat-tcttcgtcatctcctatcacctcttgatccgccgcccga 12864759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 16761436 - 16761539
Alignment:
Q  23 atcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcagcaactacctcctctttgggttctagattttcaataatg 122  Q
    |||||||||||||||| |||| || ||||||| |||||||||||| |||   |||||| ||||||| ||||  ||||  || |  ||||||||| |||||    
T  16761436 atcatcaagattaaagttatcttccttttcaagcttcacaccatcttcaggcttcttcccagcaacaaccttttcttctggataaagattttcattaatg 16761535  T
Q  123 taca 126  Q
    ||||    
T  16761536 taca 16761539  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 13069588 - 13069527
Alignment:
Q  23 atcatcaagattaaagctatcatctttttcaatcttcacaccatcatcaacattcttctcag 84  Q
    |||||||  |||||||||||| || ||||||||| ||||||||||| || | ||||||||||    
T  13069588 atcatcataattaaagctatcttccttttcaatcctcacaccatcaccagccttcttctcag 13069527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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