View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0883_low_29 (Length: 250)
Name: NF0883_low_29
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0883_low_29 |
 |  |
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[»] scaffold0417 (1 HSPs) |
 |  |  |
|
[»] scaffold0123 (1 HSPs) |
 |  |  |
|
[»] scaffold0115 (1 HSPs) |
 |  |  |
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[»] scaffold0186 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 26268807 - 26268583
Alignment:
Q |
6 |
ttgacctccgcgtcgttgtttaaatggcgtaggtgatttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctc |
105 |
Q |
|
|
|||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
26268807 |
ttgaccaccgcgtcattgtttaaatggcgtaggtgatttacaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctc |
26268708 |
T |
 |
Q |
106 |
gttttttgcattggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactcaatgtgttga |
205 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
26268707 |
gttttttgcattggagtcttagttgtagggctcagattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactcaatgtgttga |
26268608 |
T |
 |
Q |
206 |
gattgagatttaatcttgatgatgt |
230 |
Q |
|
|
|||||||||||||||||| |||||| |
|
|
T |
26268607 |
gattgagatttaatcttggtgatgt |
26268583 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 17739304 - 17739254
Alignment:
Q |
64 |
ttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc |
114 |
Q |
|
|
|||||||||||||||||| |||||||||||| ||||||||||| |||||| |
|
|
T |
17739304 |
ttgcttggtgagtatgttagaggctagcttttgagctacctcgtcttttgc |
17739254 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 27401917 - 27401854
Alignment:
Q |
83 |
gaggctagctttgaagctacctcgttttttgcatt-ggagtcttagttgtagggctctgattagg |
146 |
Q |
|
|
|||||||| |||| |||||||||||| ||||| || |||||||||||| ||||||||| |||||| |
|
|
T |
27401917 |
gaggctagatttggagctacctcgttctttgctttgggagtcttagtt-tagggctcttattagg |
27401854 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 11677426 - 11677332
Alignment:
Q |
136 |
ctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactcaatgtgttgagattgagatttaatcttgatgatgt |
230 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| | ||||||||||||||||| |||| | |||||| |
|
|
T |
11677426 |
ctctgattaggtgtcagtcttgagtcgtttatttttcatgtctttgatacttattcactcagtatgttgagattgagattttatctgggtgatgt |
11677332 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 15010924 - 15011028
Alignment:
Q |
42 |
tttgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgt--tttttgcattggagtcttagttgtagggctc |
138 |
Q |
|
|
|||||||||||||||| ||||||| ||| ||||||||| | ||||||||||||| ||||||||||| ||| | |||||||||||||| ||||||| |
|
|
T |
15010924 |
tttgcaggattagttgctttgctttgct--gtgagtatgcttgaggctagctttggagctacctcgtccctttgtctttggagtcttagtt-tagggcta |
15011020 |
T |
 |
Q |
139 |
tgattagg |
146 |
Q |
|
|
|||||||| |
|
|
T |
15011021 |
tgattagg |
15011028 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 12478557 - 12478693
Alignment:
Q |
43 |
ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgt-tttttgcattgg-agtcttagttgtagggctctg |
140 |
Q |
|
|
||||||||||||||| |||| ||||||| |||||||| ||||||||||||||||||||||| | ||||||| |||| |||||||||| |||||||||| |
|
|
T |
12478557 |
ttgcaggattagttgctttgattgcttg-tgagtatgcatgaggctagctttgaagctacctcatctttttgctttgggagtcttagtt-tagggctctg |
12478654 |
T |
 |
Q |
141 |
attaggtgtcagtcttgagtcgtttatttttcatgtctt |
179 |
Q |
|
|
|||||||||| ||||| ||| ||||||||||||||||| |
|
|
T |
12478655 |
attaggtgtcggtcttatgtcatttatttttcatgtctt |
12478693 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 16165812 - 16165911
Alignment:
Q |
47 |
aggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattggagtcttagttgtagggctctgatta |
144 |
Q |
|
|
||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||||| ||| |
|
|
T |
16165812 |
aggattagtgtttttgctttgcttg-tgagtatgttggaggctggctttgaagctacctcgtttctttgctttggagtcttag-tgtcgggctctgttta |
16165909 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 12484681 - 12484611
Alignment:
Q |
44 |
tgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc |
114 |
Q |
|
|
||||||||||||||||| |||||||||||||||| |||| ||||| |||| ||||||||| | |||||| |
|
|
T |
12484681 |
tgcaggattagttgtttgctttgcttggtgagtatgctggatgctagttttggagctacctcatcttttgc |
12484611 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 17827253 - 17827388
Alignment:
Q |
43 |
ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattgg-agtcttagttgtagggctctg |
140 |
Q |
|
|
|||||||||||||| |||| ||||||| ||| |||| | ||||||| | ||| ||||||||||| | ||||| |||| |||||||| | ||||||| || |
|
|
T |
17827253 |
ttgcaggattagtttctttgattgcttg-tgattatgcttgaggctaaccttggagctacctcgtctctttgctttgggagtcttagct-tagggctttg |
17827350 |
T |
 |
Q |
141 |
attaggtgtcagtcttgagtcgtttatttttcatgtct |
178 |
Q |
|
|
||||||||| ||||| ||||||||| ||||||||| |
|
|
T |
17827351 |
attaggtgttggtcttatgtcgtttatgcttcatgtct |
17827388 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 23292829 - 23292764
Alignment:
Q |
83 |
gaggctagctttgaagctacctcgt-tttttgcattggagtcttagt-tgtagggctctgattagg |
146 |
Q |
|
|
||||||||||||||||||| ||||| ||||| ||||||||||||| ||| |||||||||||||| |
|
|
T |
23292829 |
gaggctagctttgaagctatctcgtctttttcttttggagtcttagtgtgtcgggctctgattagg |
23292764 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 17948427 - 17948537
Alignment:
Q |
96 |
aagctacctcgttttttgcattggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactc |
195 |
Q |
|
|
||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || || | |||||| |||||||| |
|
|
T |
17948427 |
aagctacctcggctttcgcattggagtcttagttgtagggttttgattaggtgtcagtcttgagtcgtttattttttatatccttgagacttattcactc |
17948526 |
T |
 |
Q |
196 |
aatgtgttgagat |
208 |
Q |
|
|
||||||||||| |
|
|
T |
17948527 |
--tgtgttgagat |
17948537 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 17952279 - 17952389
Alignment:
Q |
96 |
aagctacctcgttttttgcattggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtcttggagactcattcactc |
195 |
Q |
|
|
||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || || | |||||| |||||||| |
|
|
T |
17952279 |
aagctacctcggctttcgcattggagtcttagttgtagggttttgattaggtgtcagtcttgagtcgtttattttttatatccttgagacttattcactc |
17952378 |
T |
 |
Q |
196 |
aatgtgttgagat |
208 |
Q |
|
|
||||||||||| |
|
|
T |
17952379 |
--tgtgttgagat |
17952389 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 18420873 - 18420978
Alignment:
Q |
43 |
ttgcaggattagttgttttg--cttgcttggtgagtatgttggagg-ctagctttgaagctacctcgt-tttttgcattggagtcttagttgtagggctc |
138 |
Q |
|
|
|||||||||||||||||||| ||||||| ||||||||| | |||| |||||||||||||| |||||| | ||| | |||||||||||||| |||||||| |
|
|
T |
18420873 |
ttgcaggattagttgttttgaccttgctt-gtgagtatgcttgaggactagctttgaagctgcctcgtctcttttctttggagtcttagtt-tagggctc |
18420970 |
T |
 |
Q |
139 |
tgattagg |
146 |
Q |
|
|
|||||||| |
|
|
T |
18420971 |
tgattagg |
18420978 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 17957301 - 17957253
Alignment:
Q |
64 |
ttgcttggtgagtatgttggaggctagctttgaagctacctcgtttttt |
112 |
Q |
|
|
||||||||||||||||||||||||||| |||| ||||||||||| |||| |
|
|
T |
17957301 |
ttgcttggtgagtatgttggaggctagatttggagctacctcgtctttt |
17957253 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 13047296 - 13047374
Alignment:
Q |
64 |
ttgcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattggagtcttagttgtagggctctgatt |
143 |
Q |
|
|
||||||||||||| || | ||||||||||||| ||||||||||||| | ||| |||||||||||| | ||||||||||||| |
|
|
T |
13047296 |
ttgcttggtgagt-tgctagaggctagctttggagctacctcgtttatctgctttggagtcttag-tatagggctctgatt |
13047374 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 9250654 - 9250608
Alignment:
Q |
67 |
cttggtgagtatgttggaggctagctttgaagctacctcgttttttgc |
114 |
Q |
|
|
|||||||||| || ||||||||||||||||||||||||||| |||||| |
|
|
T |
9250654 |
cttggtgagt-tgctggaggctagctttgaagctacctcgtcttttgc |
9250608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 1903 - 1802
Alignment:
Q |
43 |
ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcattggagtcttagttgtagggctctgat |
142 |
Q |
|
|
||||||||||||||| |||| ||||||| |||||||| | ||||||||||||| ||||| |||||||||||| |||||||||||| ||| ||||||| || |
|
|
T |
1903 |
ttgcaggattagttgctttgattgcttg-tgagtatgcttgaggctagctttggagctaactcgttttttgctttggagtcttag-tgtcgggctctaat |
1806 |
T |
 |
Q |
143 |
tagg |
146 |
Q |
|
|
|||| |
|
|
T |
1805 |
tagg |
1802 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 17124560 - 17124457
Alignment:
Q |
44 |
tgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcattggagtct-tagttgtagggctctga |
141 |
Q |
|
|
|||||||||| ||||||||||| |||| |||||||| | ||||||||||||| |||||||||||||| | | ||||||||| ||||||||||||||||| |
|
|
T |
17124560 |
tgcaggattaattgttttgctttgctta-tgagtatgcttgaggctagctttggagctacctcgttttgttccttggagtctatagttgtagggctctga |
17124462 |
T |
 |
Q |
142 |
ttagg |
146 |
Q |
|
|
||||| |
|
|
T |
17124461 |
ttagg |
17124457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 14400267 - 14400352
Alignment:
Q |
44 |
tgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttt-tttgcattggagtcttagt |
128 |
Q |
|
|
|||| |||||||| |||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
T |
14400267 |
tgcaagattagttcttttgctttgcttg-tgagtatgctggaggctagctttggagctacctcgtttctttgctttggagtcttagt |
14400352 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 17984556 - 17984633
Alignment:
Q |
47 |
aggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcattggagtct |
124 |
Q |
|
|
|||||||||| |||||||| || ||||||||| | ||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
T |
17984556 |
aggattagttactttgcttgatttgtgagtatgcttgaggctagctttggagctagctcgttttttgttttggagtct |
17984633 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 21675673 - 21675609
Alignment:
Q |
64 |
ttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgcatt-ggagtcttagt |
128 |
Q |
|
|
||||||||||||| || ||||||||| ||||| ||||||||||| |||||| || ||||||||||| |
|
|
T |
21675673 |
ttgcttggtgagt-tgctggaggctacctttggagctacctcgtcttttgctttcggagtcttagt |
21675609 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 33069 - 33002
Alignment:
Q |
47 |
aggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc |
114 |
Q |
|
|
|||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||| |||||| |
|
|
T |
33069 |
aggatttgttgctttgcttgcttggtgagtttgctggaggctagctttggagctacctcgtcttttgc |
33002 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 25487733 - 25487834
Alignment:
Q |
43 |
ttgcaggattagttgttttgcttgcttggtgagtatgttggaggctagctttgaagctacctcgt-tttttgcattggagtcttagttgtagggctctga |
141 |
Q |
|
|
||||| ||||||||||||||||||||| ||||||||| | ||||||||| ||||||| ||||||| | ||||| || |||||||| || ||||||||||| |
|
|
T |
25487733 |
ttgcatgattagttgttttgcttgctt-gtgagtatgcttgaggctagc-ttgaagcaacctcgtctctttgctttagagtcttaatt-tagggctctga |
25487829 |
T |
 |
Q |
142 |
ttagg |
146 |
Q |
|
|
||||| |
|
|
T |
25487830 |
ttagg |
25487834 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 15855569 - 15855505
Alignment:
Q |
64 |
ttgcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc-attggagtcttag |
127 |
Q |
|
|
|||||||||||||||| | ||||||||||||| ||||||| | | |||||| |||||||||||| |
|
|
T |
15855569 |
ttgcttggtgagtatgctagaggctagctttggagctaccccatcttttgcttttggagtcttag |
15855505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 19636651 - 19636687
Alignment:
Q |
78 |
tgttggaggctagctttgaagctacctcgttttttgc |
114 |
Q |
|
|
|||||||||||||||||| ||||||||||| |||||| |
|
|
T |
19636651 |
tgttggaggctagctttggagctacctcgtcttttgc |
19636687 |
T |
 |
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Target: scaffold0115 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 41465 - 41597
Alignment:
Q |
46 |
caggattagttgttttgc--ttgcttggtgagtatgttggagg-ctagctttgaagctacctcgttt-tttgcattggagtcttagttgtagggctctga |
141 |
Q |
|
|
|||||||||||| ||||| |||||||| ||||||| | |||| ||||||||| ||||||||||| | ||| | ||| | |||||||| ||||||||||| |
|
|
T |
41465 |
caggattagttgctttgcctttgcttgg-gagtatgcttgaggactagctttggagctacctcgtctcttttctttgaattcttagtt-tagggctctga |
41562 |
T |
 |
Q |
142 |
ttaggtgtcagtcttgagtcgtttatttttcatgt |
176 |
Q |
|
|
||||||||||||||| || |||||||||||||| |
|
|
T |
41563 |
ttaggtgtcagtcttttttcatttatttttcatgt |
41597 |
T |
 |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 17362449 - 17362378
Alignment:
Q |
44 |
tgcaggattagttgttttgctt-gcttggtgagtatgttggaggctagctttgaagctacctcgttttttgc |
114 |
Q |
|
|
|||| |||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||| || |||||| |
|
|
T |
17362449 |
tgcatgattagttgtttagctttgcttggtgagtatgatggaggctagctttggagctaccttgtgttttgc |
17362378 |
T |
 |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 20846657 - 20846732
Alignment:
Q |
71 |
gtgagtatgttggaggctagctttgaagctacctcgttttttgcattgg-agtcttagttgtagggctctgattagg |
146 |
Q |
|
|
||||||||| | |||||||| |||| |||||||| || |||| | |||| |||||||||| |||||||||||||||| |
|
|
T |
20846657 |
gtgagtatgcttgaggctagatttggagctaccttgtctttttctttgggagtcttagtt-tagggctctgattagg |
20846732 |
T |
 |
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Target: scaffold0186 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 10808 - 10711
Alignment:
Q |
83 |
gaggctagctttgaagctacctcgttt-tttgcatt-ggagtcttagttgtagggctctgattaggtgtcagtcttgagtcgtttatttttcatgtctt |
179 |
Q |
|
|
|||| |||||||| ||||||||||| | |||| || |||||||||||| ||||| |||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
T |
10808 |
gaggatagctttggagctacctcgtctctttgttttaggagtcttagtt-tagggttctgattaggcgtcggtcttatgtcgtttatttttcatgtctt |
10711 |
T |
 |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 15807183 - 15807224
Alignment:
Q |
64 |
ttgcttggtgagtatgttggaggctagctttgaagctacctc |
105 |
Q |
|
|
|||||||||||||||| |||||| |||||||||||||||||| |
|
|
T |
15807183 |
ttgcttggtgagtatgctggaggatagctttgaagctacctc |
15807224 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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