View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0883_low_7 (Length: 421)
Name: NF0883_low_7
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0883_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 7831747 - 7831364
Alignment:
| Q |
1 |
tgagacttcatcttcgactcctttccagaacaaactctctccagttcctctcggtttctcttgacacatctcttcattctgtacatcctttctctgtgct |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7831747 |
tgagacttcatcttcggctcctttccagaacaaactctctccagttcctctcggtttctcttgacacatctcttcattctatacatcctttctctgtgct |
7831648 |
T |
|
| Q |
101 |
ttcactcctcnnnnnnnctgctgctgaggtagaagggtctgagaggattccaattgttcggctaaatctgcatgaagaagacattcacattgctatagta |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
7831647 |
ttcactcctctttttttctgctgctgaggtagaagggtctgagaggattccaattgttcggctaaatctgcatgaagaagacattcacattcctctagta |
7831548 |
T |
|
| Q |
201 |
taattggtatactcatattaatatacaatgcctcgtggcctttttccttcacatgtcgtgctgttgttgtcagtaaatctacaaccacttggcctgcact |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
7831547 |
taattggtatacttatattaatatacaatgcctcgtggcctttttccttcacatgtcgtgctgttgttgtcagtaaatctacaatcacttggcctgcact |
7831448 |
T |
|
| Q |
301 |
ttgaacttgtgcatcagaaattagatttgtctcacttctcatcaacatctccaaaatatgtcccacatgccacacaggttctgc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
7831447 |
ttgaacttgtgcatcagaaattagatttgtctcacttctcatcaacatctccaaaatatgtcccacatgccacacatgttctgc |
7831364 |
T |
|
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