View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0883_low_9 (Length: 387)

Name: NF0883_low_9
Description: NF0883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0883_low_9
NF0883_low_9
[»] chr1 (11 HSPs)
chr1 (1-158)||(48942358-48942515)
chr1 (233-318)||(14461715-14461800)
chr1 (233-323)||(5559392-5559482)
chr1 (233-343)||(24063911-24064021)
chr1 (233-323)||(41198524-41198614)
chr1 (233-339)||(24614742-24614848)
chr1 (233-323)||(41074902-41074992)
chr1 (233-336)||(7004674-7004777)
chr1 (234-323)||(16902572-16902661)
chr1 (234-317)||(33719615-33719698)
chr1 (233-294)||(28655579-28655640)
[»] chr7 (12 HSPs)
chr7 (233-343)||(1575842-1575952)
chr7 (233-323)||(27392590-27392680)
chr7 (233-342)||(323603-323712)
chr7 (233-323)||(28694687-28694777)
chr7 (233-318)||(36482647-36482732)
chr7 (233-339)||(6714212-6714318)
chr7 (105-163)||(38984669-38984727)
chr7 (233-342)||(10286413-10286515)
chr7 (235-318)||(36582535-36582618)
chr7 (234-323)||(31280189-31280278)
chr7 (233-316)||(29988005-29988088)
chr7 (234-274)||(8937854-8937894)
[»] chr5 (13 HSPs)
chr5 (233-343)||(40987339-40987449)
chr5 (233-342)||(33160517-33160626)
chr5 (233-333)||(13554767-13554867)
chr5 (233-323)||(13521490-13521580)
chr5 (233-316)||(1495912-1495995)
chr5 (233-323)||(27110654-27110744)
chr5 (234-318)||(41061203-41061287)
chr5 (233-323)||(42716135-42716225)
chr5 (233-321)||(4986180-4986268)
chr5 (233-293)||(12291415-12291475)
chr5 (241-336)||(20210050-20210145)
chr5 (233-323)||(35449664-35449753)
chr5 (283-335)||(25932197-25932249)
[»] chr4 (20 HSPs)
chr4 (233-343)||(24575154-24575264)
chr4 (233-343)||(9279924-9280034)
chr4 (233-342)||(47498838-47498947)
chr4 (233-339)||(42414550-42414656)
chr4 (233-339)||(3756962-3757068)
chr4 (233-323)||(46251940-46252030)
chr4 (250-343)||(7700297-7700390)
chr4 (233-311)||(18780958-18781036)
chr4 (233-323)||(42429988-42430078)
chr4 (233-298)||(47997031-47997096)
chr4 (233-324)||(56078436-56078527)
chr4 (250-312)||(6184090-6184152)
chr4 (233-323)||(24319041-24319131)
chr4 (233-323)||(24859007-24859097)
chr4 (233-323)||(34276947-34277037)
chr4 (234-323)||(20580592-20580681)
chr4 (233-294)||(37602649-37602710)
chr4 (233-343)||(7611685-7611794)
chr4 (244-294)||(31568178-31568228)
chr4 (250-323)||(40436458-40436531)
[»] chr8 (16 HSPs)
chr8 (233-343)||(43620036-43620146)
chr8 (233-343)||(26721155-26721265)
chr8 (233-343)||(13470863-13470973)
chr8 (233-323)||(31127268-31127358)
chr8 (250-343)||(1265121-1265214)
chr8 (234-323)||(6345305-6345394)
chr8 (234-323)||(37948952-37949041)
chr8 (233-342)||(4602595-4602704)
chr8 (233-319)||(26721289-26721375)
chr8 (233-334)||(32906902-32907003)
chr8 (233-339)||(4267344-4267450)
chr8 (233-343)||(42200065-42200175)
chr8 (234-323)||(3106183-3106272)
chr8 (234-343)||(10183231-10183339)
chr8 (239-318)||(27808983-27809062)
chr8 (233-323)||(3773821-3773909)
[»] chr6 (6 HSPs)
chr6 (233-343)||(7608279-7608389)
chr6 (233-342)||(21946709-21946818)
chr6 (233-323)||(16705374-16705457)
chr6 (233-323)||(3901151-3901241)
chr6 (234-312)||(10484409-10484487)
chr6 (234-320)||(10386152-10386237)
[»] chr2 (9 HSPs)
chr2 (233-343)||(16672011-16672122)
chr2 (233-342)||(18511556-18511658)
chr2 (233-314)||(21352336-21352417)
chr2 (240-343)||(7753802-7753902)
chr2 (233-277)||(10997251-10997295)
chr2 (233-339)||(42295812-42295917)
chr2 (234-321)||(22596075-22596162)
chr2 (245-322)||(34439851-34439928)
chr2 (233-319)||(33440990-33441076)
[»] chr3 (11 HSPs)
chr3 (250-343)||(37282644-37282737)
chr3 (233-342)||(32055869-32055978)
chr3 (250-343)||(19636545-19636638)
chr3 (233-342)||(25706300-25706410)
chr3 (233-339)||(1030460-1030566)
chr3 (233-343)||(19997373-19997484)
chr3 (250-319)||(39717243-39717312)
chr3 (233-343)||(29282999-29283104)
chr3 (245-323)||(48085314-48085392)
chr3 (233-343)||(27167802-27167911)
chr3 (233-298)||(40166829-40166894)
[»] scaffold0034 (1 HSPs)
scaffold0034 (234-321)||(47775-47862)
[»] scaffold0717 (1 HSPs)
scaffold0717 (234-319)||(5490-5575)
[»] scaffold0396 (1 HSPs)
scaffold0396 (250-339)||(1267-1356)
[»] scaffold0140 (1 HSPs)
scaffold0140 (233-318)||(15489-15574)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 48942515 - 48942358
Alignment:
Q  1 ttatcgtttccttatcgtaatctcaattgggtgggtttttgcttcaatacaaagccaaaacaatcccataatgagacgttggggcttatcttttcggatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48942515 ttatcgtttccttatcgtaatctcaattgggtgggtttttgcttcaatacaaagccaaaacaatcccataatgagacgttggggcttatctttttggatt 48942416  T
Q  101 tttcctctagcttaagttctgttttgatcttgtgtaacttctgttctatggctgtata 158  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48942415 tttcctctggcttaagttctgttttgatcttgtgtaacttctgttctatggctgtata 48942358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 14461715 - 14461800
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacc 318  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14461715 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaacc 14461800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 5559392 - 5559482
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||||||||| |||| ||||    
T  5559392 gaatatttttggatgtgtttggatgttgttttggaaaaaccgccatgatcggatcagatttcggattgcattttcaaaaccaaaccgaacc 5559482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 24064021 - 24063911
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    ||||||| |||  ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||  | ||||||||||| || |||||| | ||||||    
T  24064021 gaatattattgattgtgtatggatgttgttttggaaaaaccgctatgattggatcggatttcggatcactttttcaaaaccaaatcaaaccgaaccgaac 24063922  T
Q  333 cgcaaaagtaa 343  Q
    | |||||||||    
T  24063921 cacaaaagtaa 24063911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 41198614 - 41198524
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||| |||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||  | ||| |||||| ||||||||||    
T  41198614 gaatatatttggatgtgattggatgttgttttgtaaaaaccgctaagatcggatcggatttcggatcacttttccaaaactgaaccaaacc 41198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 24614742 - 24614848
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||| ||||||||  ||||||||| |||||| |||||||| || ||||||||| ||||| ||||  | |||| |||||||||||||||| | ||||||    
T  24614742 gaatatatttggatgcttttggatgtcgttttgtaaaaaccgctaagatcggatcagattttggatcacttttttaaaaccgaaccaaaccgaaccgaac 24614841  T
Q  333 cgcaaaa 339  Q
    |||||||    
T  24614842 cgcaaaa 24614848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 41074902 - 41074992
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| || ||| | |||||||||  | | ||||||||| |||| ||||    
T  41074902 gaatatttttggatgtgtttggatgttgttttgaaaaaaccgctatggtcagattgaatttcggatcacctcttcaaaaccaaaccgaacc 41074992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 7004674 - 7004777
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    ||||||| ||||||||||||| |||   |||||  ||||||| |  ||| ||||||||||| ||||||  ||||||||||||||||||||  | ||||||    
T  7004674 gaatattattggatgtgtttgaatgacattttgtgaaaaccgcttggattggatcggattttggattgatttttcaaaaccgaaccaaactgaaccgaac 7004773  T
Q  333 cgca 336  Q
    ||||    
T  7004774 cgca 7004777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 16902572 - 16902661
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||| |||||||||||||||||||||| |||||| |  | |||| |||   |||| ||||  | |||||||||||||||||||||    
T  16902572 aatatttttagatgtgtttggatgttgttttgcaaaaactgcaaggatcagattaaattttggatcactttttcaaaaccgaaccaaacc 16902661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 33719698 - 33719615
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaac 317  Q
    |||||||||||||| ||||||||||||||||| |||||| | || ||||| |||  ||||| |||  | |||||||||| ||||    
T  33719698 aatatttttggatgcgtttggatgttgttttgtaaaaactgctaggatcgaatcaaatttcagatcactttttcaaaactgaac 33719615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 28655579 - 28655640
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttc 294  Q
    |||||| ||| |||||||||||||||||||||| ||||| |  || |||||||||| |||||    
T  28655579 gaatatatttcgatgtgtttggatgttgttttgtaaaaatcaataggatcggatcgaatttc 28655640  T

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Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 1575842 - 1575952
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  1575842 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaac 1575941  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  1575942 cgcaaaagtaa 1575952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 27392590 - 27392680
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  27392590 gaatatttttggatgtgtttggatgttgttttgaaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 27392680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 342
Target Start/End: Complemental strand, 323712 - 323603
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||  | ||||||||||||||||||||  | ||||||    
T  323712 gaatatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcaccttttcaaaaccgaaccaaacagaaccgaac 323613  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  323612 cgcaaaagta 323603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 28694687 - 28694777
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||  |||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  28694687 gaatatttttttatgtgtttggatgttgttatggaaaaaccgctatgatcggattggatttcggattgcgttttcaaaaccaaaccgaacc 28694777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 36482732 - 36482647
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacc 318  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||  ||||||||||||||||    
T  36482732 gaatatttttggatgtgtttggatgttgttttagaaaaaccactatgatcggatcggttttcggattgtcttttcaaaaccgaacc 36482647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 339
Target Start/End: Complemental strand, 6714318 - 6714212
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||  | || ||||||| ||||| |||||| || |||    
T  6714318 gaatatatttggatgtgtttggatgttattttgtaaaaaccgctaggatcggatcggatttcgaatcactttctcaaaactgaaccgaaccaaaccaaac 6714219  T
Q  333 cgcaaaa 339  Q
    |||||||    
T  6714218 cgcaaaa 6714212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 38984669 - 38984727
Alignment:
Q  105 ctctagcttaagttctgttttgatcttgtgtaacttctgttctatggctgtataggggt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  38984669 ctctagcttaagttctgttttgatcttgtgtaacttctgttctacggctgtataagggt 38984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 10286413 - 10286515
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| || ||       |||||||  | ||||||||||||||||||||| | ||||||    
T  10286413 gaatatttttggatgtgtttggatgttgttttggcaaaaccgctataattgg-------ttcggatcaccttttcaaaaccgaaccaaaccgaaccgaac 10286505  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  10286506 cgcaaaagta 10286515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 36582618 - 36582535
Alignment:
Q  235 atatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacc 318  Q
    |||| |||||||| ||||||||||||||||| |||||||| || |||| |||||||||||||||  | ||||||||||||||||    
T  36582618 atatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatctgatcggatttcggatcactttttcaaaaccgaacc 36582535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 31280278 - 31280189
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||| |||||||  ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||  | |||||||||||||||| ||||    
T  31280278 aatatatttggatacgtttggatgttgttttgtaaaaatcgttaagatcggatcggattttggatcactttttcaaaaccgaaccgaacc 31280189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 29988088 - 29988005
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaa 316  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||| |||  |||| ||||||||||  | || |||||||||||    
T  29988088 gaatatttttggatgtgtttggatgttgttttgtaaaaactattaggattcgatcagatttcggatcactttctcaaaaccgaa 29988005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 8937894 - 8937854
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccg 274  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  8937894 aatatttttggatgcgtttggatgttgttttgtaaaaaccg 8937854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 40987339 - 40987449
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  40987339 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaac 40987438  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  40987439 cgcaaaagtaa 40987449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 33160517 - 33160626
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||  | ||||||||| ||||||||||| | ||||||    
T  33160517 gaatatttttggatgtgtttggaggttgttttggaaaaactgttatgatcagttcggatttcggatcaccttttcaaaatcgaaccaaaccgaaccgaac 33160616  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  33160617 cgcaaaagta 33160626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 13554767 - 13554867
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||  |||||||||||| ||||| ||||||||||||||||||||||| ||||||    
T  13554767 gaatatttttagatgtgtttggatgttgttttggaaaaaccgctataattagatcggatttcgaattgcattttcaaaaccgaaccaaaccaagccgaac 13554866  T
Q  333 c 333  Q
    |    
T  13554867 c 13554867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 13521490 - 13521580
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||||||||| ||||||||||||||| ||||| |||||   |||||||||||  ||||| |||||||||||||||| ||||    
T  13521490 gaatatttttggatgtgtttagatgttgttttggaataaccgctatgactagatcggatttcaaattgcattttcaaaaccgaaccgaacc 13521580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 1495995 - 1495912
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaa 316  Q
    |||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||| ||||||||  | ||||||||||||||    
T  1495995 gaatatatttggatgtgtttggatattgttttgtaaaaaccgctaagatcggatcgggtttcggatcaccttttcaaaaccgaa 1495912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 27110654 - 27110744
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||  ||||  | ||| |||||||||||| ||||    
T  27110654 gaatatatttggatgtgtttggatgttgttttgtaaaaaccgctaagatcggatcggattctggatcacttttccaaaaccgaaccgaacc 27110744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 41061203 - 41061287
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacc 318  Q
    ||||| |||||||| |||||||| |||||||| |||||||| || ||||||| ||||||| ||||| | ||||||||||||||||    
T  41061203 aatatatttggatgcgtttggatattgttttgtaaaaaccgctaagatcggaacggattttggattactttttcaaaaccgaacc 41061287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 42716225 - 42716135
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||| ||| ||||||||||||||||| |||||  | || |||||  |  ||||||||||| | |||||||||| ||||||||||    
T  42716225 gaatatttttgaatgcgtttggatgttgttttgtaaaaaaagctaggatcgatttagatttcggattactttttcaaaactgaaccaaacc 42716135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 4986180 - 4986268
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaa 321  Q
    |||||||||| |||| ||||||||||||||||| | |||||  || ||||  ||| ||||| ||||  | |||||||||||||||||||    
T  4986180 gaatattttttgatgcgtttggatgttgttttgtataaaccactaggatcaaatcagatttaggatcactttttcaaaaccgaaccaaa 4986268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 12291475 - 12291415
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggattt 293  Q
    |||||||||||||||  |||||||||||||||| |||||||  || ||| |||||||||||    
T  12291475 gaatatttttggatgcatttggatgttgttttgtaaaaacctctaagattggatcggattt 12291415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 20210145 - 20210050
Alignment:
Q  241 ttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgca 336  Q
    ||||| ||||||||||| | ||||   ||||||| |  ||| |||||| |||| ||||||  ||||||||||| ||||||||||| ||||||||||    
T  20210145 ttggacgtgtttggatgatattttatgaaaaccgctcagattggatcgtattttggattgaattttcaaaaccaaaccaaaccaaaccgaaccgca 20210050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 35449753 - 35449664
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||| ||| |||| ||||||||||||||||| |||||||| || |||||| |||| ||| ||||  | |||||||||  ||||||||||    
T  35449753 gaatatatttagatgcgtttggatgttgttttgtaaaaaccgctaagatcggttcggcttttggatcac-ttttcaaaattgaaccaaacc 35449664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 25932197 - 25932249
Alignment:
Q  283 ggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgc 335  Q
    ||||||||||| ||||||  ||||||||||| ||||||||||| | |||||||    
T  25932197 ggatcggattttggattgaattttcaaaaccaaaccaaaccaaacagaaccgc 25932249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 24575264 - 24575154
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  24575264 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaac 24575165  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  24575164 cgcaaaagtaa 24575154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 9279924 - 9280034
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | || |||    
T  9279924 gaatatttttggatttgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaacctaacctaac 9280023  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  9280024 cgcaaaagtaa 9280034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 342
Target Start/End: Complemental strand, 47498947 - 47498838
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||  | |||| ||||||||||| |||| | ||||||    
T  47498947 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgattggttcggatttcggatcacctttttaaaaccgaaccgaaccgaaccgaac 47498848  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  47498847 cgcaaaagta 47498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 339
Target Start/End: Complemental strand, 42414656 - 42414550
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||||||| ||||  | ||||||||||||||||||||| | ||||||    
T  42414656 gaatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcaaaaccgaaccaaaccgaaccgaac 42414557  T
Q  333 cgcaaaa 339  Q
    |||||||    
T  42414556 cgcaaaa 42414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 3756962 - 3757068
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||| |||||||| ||||| ||||||||||  ||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||| |  |||||    
T  3756962 gaatatgtttggatgcgtttgaatgttgttttttaaaaaccgttaagatcggatcggatttcggatcactttttcaaaaccgaaccaaaccgaatcgaac 3757061  T
Q  333 cgcaaaa 339  Q
    |||||||    
T  3757062 cgcaaaa 3757068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 46252030 - 46251940
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||||  | |||||||||||||||| ||||    
T  46252030 gaatatttttggatgtgtttggatgttgttttggaaaagccgctatgattggttcggatttcggatcaccttttcaaaaccgaaccgaacc 46251940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 7700297 - 7700390
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgcaaaagtaa 343  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||| |||||| || |||| |||||||||    
T  7700297 tttggatgttgttttagaaaaaccgctatgatcggatcgaatttcagattgcgttttcaaaactgaaccgaaccaaaccaaaccacaaaagtaa 7700390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 18781036 - 18780958
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaa 311  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  18781036 gaatatttttggatgtgtttgaattttgttttggaaaaaccgttatgatcagatcagatttcgaattacgttttcaaaa 18780958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 42429988 - 42430078
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||| |||||||  ||||||||||||||||| |||||||| |  |||||||||| |||||||||  | ||||||||||| |||||||||    
T  42429988 gaatatatttggatccgtttggatgttgttttgtaaaaaccgctcagatcggatcgaatttcggatcactttttcaaaaccaaaccaaacc 42430078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 47997096 - 47997031
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggat 298  Q
    |||||||||| |||||| ||| ||||||||||| |||||||| || ||||||||||||||||||||    
T  47997096 gaatatttttcgatgtgcttgaatgttgttttgtaaaaaccgctaggatcggatcggatttcggat 47997031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 56078436 - 56078527
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacca 324  Q
    ||||||||| ||||| ||||||||||||||| | |||||  ||| |||||||||||||||||  ||  | ||||||||||||||| ||||||    
T  56078436 gaatattttcggatgcgtttggatgttgtttagtaaaaattgttgtgatcggatcggatttcaaatcactttttcaaaaccgaacaaaacca 56078527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 6184152 - 6184090
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaac 312  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||  | ||||||||||    
T  6184152 tttggatgttgttttgtaaaaatcgttaggatcggatcggatttcggatcactttttcaaaac 6184090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 24319041 - 24319131
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||||||| ||||||||||||||||   |||||||||| |||||| | | |||| ||||  | || ||||||||||||||||||    
T  24319041 gaatatttttggatgcgtttggatgttgttttatcaaaaccgttaggatcggtttgaattttggatcactttctcaaaaccgaaccaaacc 24319131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 24859007 - 24859097
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||| |||||||||||||||||   |||||  |||||||||  ||| ||||||||||| ||||||  |||||||||||||||| ||||    
T  24859007 gaatattattggatgtgtttggatgacattttgtgaaaaccgtttggattggatcggattttggattgatttttcaaaaccgaaccgaacc 24859097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 34276947 - 34277037
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||| |||||||| ||||||||||||||||| |||||||| || |||||||||| |||  ||||  | ||||||||| |||||| ||||    
T  34276947 gaatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcgaattctggatcactttttcaaaatcgaaccgaacc 34277037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 20580592 - 20580681
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||| | ||| ||||||||||| || ||  | || |||||||||||||||| |||  | ||||||||||| |||||||||    
T  20580592 aatatttttggatgcgcttgaatgttgttttgtaagaattgctaggatcggatcggatttcagatcactttttcaaaaccaaaccaaacc 20580681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 37602710 - 37602649
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttc 294  Q
    ||||||||||||||||||||| ||||| ||||| |||||| | || ||||||||| ||||||    
T  37602710 gaatatttttggatgtgtttgaatgttcttttgtaaaaactgctaggatcggatctgatttc 37602649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 7611685 - 7611794
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||| || |||||||| || ||||| |||||||| || |||| |||| |||||| |||    || ||||||||||||||||| || ||||||    
T  7611685 gaatatttttggttgcgtttggat-ttattttgtaaaaaccgctaggatcagatcagatttcagatcattttctcaaaaccgaaccaaactaaaccgaac 7611783  T
Q  333 cgcaaaagtaa 343  Q
     | ||||||||    
T  7611784 tgtaaaagtaa 7611794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 31568228 - 31568178
Alignment:
Q  244 gatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttc 294  Q
    |||||| ||||||||||||||| |||||||| || || |||||||||||||    
T  31568228 gatgtggttggatgttgttttgtaaaaaccgctaagaccggatcggatttc 31568178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 40436458 - 40436531
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||||| |||||  |||| |||| ||||||| |||||||  | ||||||||||| |||| ||||    
T  40436458 tttggatgttgttttgtaaaaattgttacgatcagatcggacttcggatcactttttcaaaaccaaaccgaacc 40436531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 43620146 - 43620036
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  43620146 gaatatttttggatgtgtttggatgttgctttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaac 43620047  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  43620046 cgcaaaagtaa 43620036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 26721265 - 26721155
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||||||||||||| |||||| || |||    
T  26721265 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcttattttggattgcgttttcaaaaccgaaccgaaccaaaccaaac 26721166  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  26721165 cgcaaaagtaa 26721155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 13470863 - 13470973
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||| |||| ||||||||||||||||||||||| || |||    
T  13470863 gaatatttttggatgtgtttggatgttgttttggaaaaaacgctacgatcggatcggttttcggtttgccttttcaaaaccgaaccaaaccaaaccaaac 13470962  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  13470963 cgcaaaagtaa 13470973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 31127358 - 31127268
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  31127358 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 31127268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 1265121 - 1265214
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgcaaaagtaa 343  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  1265121 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaaccaaaccgaaccgcaaaagtaa 1265214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 6345305 - 6345394
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  6345305 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 6345394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 37949041 - 37948952
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  37949041 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 37948952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 4602595 - 4602704
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||||| || |||||||||||||  | ||||||||||||||||||||| | ||||||    
T  4602595 gaatatttttggacgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaaccgaaccgaac 4602694  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  4602695 cgcaaaagta 4602704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 26721375 - 26721289
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacca 319  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||    
T  26721375 gaatatttttggatgtgtttggacgttgttttggaaaaaccgctatgatcaaatcagatttcggattgcgttttcaaaaccgaacca 26721289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 32906902 - 32907003
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||  | ||||||||||||||||||||| | ||||||    
T  32906902 gaatatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaaccgaaccgaac 32907001  T
Q  333 cg 334  Q
    ||    
T  32907002 cg 32907003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 4267344 - 4267450
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||||||||| ||||  | ||||||||||||||||||||| | ||||||    
T  4267344 gaatatatttggatgcgtttggatgttattttgtaaaaaccgctaagatcggatcggattttggatcaccttttcaaaaccgaaccaaaccgaaccgaac 4267443  T
Q  333 cgcaaaa 339  Q
    |||||||    
T  4267444 cgcaaaa 4267450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 42200175 - 42200065
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||||||||| |||||||||  | || |||| |||  | |||||| | ||||||    
T  42200175 gaatatttttagatgtgtttggatgttgttttataaaaaccgttatgatcggatcgaatttcggatcactttctcaataccagatcaaaccgaaccgaac 42200076  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  42200075 cgcaaaagtaa 42200065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 3106183 - 3106272
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||| ||||||||||||||||| |||||| | || ||||| ||||||||| ||||  | || ||||||||||||| ||||    
T  3106183 aatatttttggatgcgtttggatgttgttttgtaaaaactgctaggatcgtatcggattttggatcactttctcaaaaccgaaccgaacc 3106272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 10183339 - 10183231
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaacc 333  Q
    ||||||||||||||||||||||||||||||   |||||| |||| ||| ||||||||||||| || |  |||||||||  ||| |||||||| || ||||    
T  10183339 aatatttttggatgtgtttggatgttgtttcctaaaaactgttaagattggatcggatttcgaatcgatttttcaaaa-tgaatcaaaccaaacctaacc 10183241  T
Q  334 gcaaaagtaa 343  Q
     |||||||||    
T  10183240 acaaaagtaa 10183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 27809062 - 27808983
Alignment:
Q  239 ttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacc 318  Q
    ||||||||||||||| |||||| || | ||||||||||| |||||||||||||||| ||   | ||||||||||||||||    
T  27809062 ttttggatgtgtttgaatgttggttagtaaaaaccgttaagatcggatcggatttcagaccactttttcaaaaccgaacc 27808983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 3773821 - 3773909
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||| |||||||| |||||||||||| |||| |||||||  || ||| ||||||||||| ||||  | ||||||||||| |||||||||    
T  3773821 gaatatatttggatgcgtttggatgttg-tttgtaaaaaccactaagat-ggatcggattttggatcactttttcaaaaccaaaccaaacc 3773909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 7608389 - 7608279
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  7608389 gaatatttttggatttgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaac 7608290  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  7608289 cgcaaaagtaa 7608279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 21946709 - 21946818
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| || || |||||||||||||    ||||||||||||||||||||||| ||||||    
T  21946709 gaatattttttgatgtgtttggatgttgttttggaaaaaccgctataattggttcggatttcggatcagcttttcaaaaccgaaccaaaccaaaccgaac 21946808  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  21946809 cgcaaaagta 21946818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 16705457 - 16705374
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||| ||||    
T  16705457 gaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcg-------gattgcgttttcaaaaccgaaccgaacc 16705374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 3901241 - 3901151
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    |||||||||||||||||||||||||||||||||  |||||||  | |||| ||| ||| |||||||  | |||| ||||||||||| ||||    
T  3901241 gaatatttttggatgtgtttggatgttgttttgccaaaaccgccaagatcagattggacttcggatcacttttttaaaaccgaaccgaacc 3901151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 10484487 - 10484409
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaac 312  Q
    |||||||||  ||| ||||||||||||| ||  |||||||| ||||||||||| |||||||||||||| || |||||||    
T  10484487 aatattttttaatgcgtttggatgttgtcttctaaaaaccgctatgatcggattggatttcggattgctttctcaaaac 10484409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 10386152 - 10386237
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaa 320  Q
    |||| |||||||||  || ||||||||||||| |||||||| || ||||  ||||||||||||||  | ||||||||||||| ||||    
T  10386152 aatacttttggatgcattcggatgttgttttgtaaaaaccgctaggatcatatcggatttcggatcac-ttttcaaaaccgatccaa 10386237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 16672011 - 16672122
Alignment:
Q  233 gaatatttttggatgtgt-ttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaa 331  Q
    |||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  16672011 gaatatttttggatgtgtgttggatgttgttttggaaaaactgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaa 16672110  T
Q  332 ccgcaaaagtaa 343  Q
    ||||||||||||    
T  16672111 ccgcaaaagtaa 16672122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 18511556 - 18511658
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| || ||       |||||||  | ||||||||||||||||||||| | ||||||    
T  18511556 gaatatttttggatgtgtttggatgttgttttggcaaaaccgctataattgg-------ttcggatcaccttttcaaaaccgaaccaaaccgaaccgaac 18511648  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  18511649 cgcaaaagta 18511658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 21352417 - 21352336
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccg 314  Q
    |||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||||||| ||||  | ||||||||||||    
T  21352417 gaatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcaaaaccg 21352336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 7753802 - 7753902
Alignment:
Q  240 tttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgcaaaa 339  Q
    ||||||||||||| |||||||||||| ||||||   ||||||||||||||||||| |||  | ||||||||||| ||| |||| || |||||| |||||     
T  7753802 tttggatgtgttttgatgttgttttgtaaaaac---tatgatcggatcggatttcagataactttttcaaaaccaaacaaaacaaaaccgaactgcaaag 7753898  T
Q  340 gtaa 343  Q
    ||||    
T  7753899 gtaa 7753902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 10997251 - 10997295
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgtta 277  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  10997251 gaatatttttggatgtgtttggatgttgttttgtaaaaaccgtta 10997295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 339
Target Start/End: Complemental strand, 42295917 - 42295812
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||| |||||||| ||||| ||||||||||| |||||| | || |||||| |||| ||||||||  | ||||||||| ||||||||||| | ||||||    
T  42295917 gaatatatttggatgcgtttgtatgttgttttgtaaaaactgctaagatcggttcggctttcggatcac-ttttcaaaatcgaaccaaaccgaaccgaac 42295819  T
Q  333 cgcaaaa 339  Q
     ||||||    
T  42295818 tgcaaaa 42295812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 22596075 - 22596162
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaa 321  Q
    ||||| ||||||||  ||| |||||||||||| ||||| || || |||| |||||||||||||||  | ||||||||||| |||||||    
T  22596075 aatatatttggatgcatttcgatgttgttttgtaaaaatcgctaagatcagatcggatttcggatcactttttcaaaaccaaaccaaa 22596162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 34439851 - 34439928
Alignment:
Q  245 atgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaac 322  Q
    ||||||||| |||||  |||| |||||||| ||  || |||||||||| |||||| | ||||||||||||||||||||    
T  34439851 atgtgtttgaatgttagtttgtaaaaaccgctagaattggatcggattccggattactttttcaaaaccgaaccaaac 34439928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 33440990 - 33441076
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacca 319  Q
    ||||||| ||||||||||||||||| | |||||   ||||||||  ||| | ||||||||| ||||||  ||||||||| |||||||    
T  33440990 gaatattattggatgtgtttggatgatattttgcgtaaaccgtttggattgcatcggattttggattgatttttcaaaatcgaacca 33441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 250 - 343
Target Start/End: Complemental strand, 37282737 - 37282644
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgcaaaagtaa 343  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  37282737 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 37282644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 342
Target Start/End: Complemental strand, 32055978 - 32055869
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||  | ||||||||||||||||||| | | ||||||    
T  32055978 gaatatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaatcgaaccgaac 32055879  T
Q  333 cgcaaaagta 342  Q
    ||||||||||    
T  32055878 cgcaaaagta 32055869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 343
Target Start/End: Complemental strand, 19636638 - 19636545
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgcaaaagtaa 343  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||    
T  19636638 tttggatgttgttttggaaaagccgcgatgatcggatcggatttcggattgagttttcaaaaccgaaccgaaccaaacccaaccgcaaaagtaa 19636545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 25706300 - 25706410
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaa-ccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaa 331  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||| ||| |||  | ||||||||||||||||||||| | |||||    
T  25706300 gaatatttttggatgtgtttggatgttgttttgaaaaaaaccgctatgatcggttcggacttcagataaccttttcaaaaccgaaccaaaccgaaccgaa 25706399  T
Q  332 ccgcaaaagta 342  Q
    |||||||||||    
T  25706400 ccgcaaaagta 25706410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 1030460 - 1030566
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||||||| ||||  | ||||| ||||||||||||||| | | ||||    
T  1030460 gaatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcgaaaccgaaccaaaccgaactgaac 1030559  T
Q  333 cgcaaaa 339  Q
    |||||||    
T  1030560 cgcaaaa 1030566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 19997373 - 19997484
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggattt-cggattgcgttttcaaaaccgaaccaaaccaatccgaa 331  Q
    |||||| |||||||| |||| |||||||| | | |||||| | || ||||||||||||||| |||||  | ||||||||||||||||||||| | | |||    
T  19997373 gaatatatttggatgcgtttagatgttgtctcgtaaaaactgctaagatcggatcggattttcggatcactttttcaaaaccgaaccaaaccgaactgaa 19997472  T
Q  332 ccgcaaaagtaa 343  Q
    ||||||||||||    
T  19997473 ccgcaaaagtaa 19997484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 39717312 - 39717243
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacca 319  Q
    |||||||||||| |||||||||||| ||||||||| |||||||| ||||  | |||| ||||||||||||    
T  39717312 tttggatgttgtattggaaaaaccgctatgatcggttcggattttggatcaccttttgaaaaccgaacca 39717243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 29282999 - 29283104
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    |||||||||||||||  |||||||||||||||| |||||||| ||     ||| ||||||||||||  | || ||||||  ||||| |||| | ||||||    
T  29282999 gaatatttttggatgcatttggatgttgttttgtaaaaaccgcta-----ggaacggatttcggatcactttctcaaaattgaaccgaaccgaaccgaac 29283093  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  29283094 cgcaaaagtaa 29283104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 48085392 - 48085314
Alignment:
Q  245 atgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaacc 323  Q
    ||||||||||||||||||||| ||||| || |   |||  ||||||||||||||  | |||||||||||||||||||||    
T  48085392 atgtgtttggatgttgttttgtaaaaagcgatggtatcaaatcggatttcggatcactttttcaaaaccgaaccaaacc 48085314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 27167911 - 27167802
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaac 332  Q
    ||||||||||||||| ||||| ||| ||||||| |||||||| || | ||  |||||||||| |||  | |||| ||||  ||| ||||||||  |||||    
T  27167911 gaatatttttggatgcgtttgaatgctgttttgtaaaaaccgcta-ggtcatatcggatttcagatcacttttttaaaattgaatcaaaccaaatcgaac 27167813  T
Q  333 cgcaaaagtaa 343  Q
    |||||||||||    
T  27167812 cgcaaaagtaa 27167802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 40166894 - 40166829
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggat 298  Q
    |||||| ||| |||||||||| ||||||||||| |||||||| || |||  |||||||| ||||||    
T  40166894 gaatatatttagatgtgtttgaatgttgttttgtaaaaaccgctaagattcgatcggatatcggat 40166829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 47862 - 47775
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaa 321  Q
    ||||||| |||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||  | || ||||||||||| ||||    
T  47862 aatatttgtggatgtgtttggatgttgttttgtaaaaatcgctatgatcagatcggatttcggatcactttctcaaaaccgaatcaaa 47775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 5490 - 5575
Alignment:
Q  234 aatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacca 319  Q
    |||||||||||||| | ||||||||||||||| || || || || |||||||||||||||  |||  | ||||||||||| |||||    
T  5490 aatatttttggatgcgcttggatgttgttttgtaagaatcgctaggatcggatcggatttaagatcactttttcaaaaccaaacca 5575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 1356 - 1267
Alignment:
Q  250 tttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaaccaaaccaatccgaaccgcaaaa 339  Q
    ||||||| |||||||| ||| |||| || ||||| ||||||||||||||  | ||||||||| ||||  ||||| | || ||||||||||    
T  1356 tttggatattgttttgtaaacaccgctaagatcgaatcggatttcggatcactttttcaaaatcgaattaaaccgaaccaaaccgcaaaa 1267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 15489 - 15574
Alignment:
Q  233 gaatatttttggatgtgtttggatgttgttttggaaaaaccgttatgatcggatcggatttcggattgcgttttcaaaaccgaacc 318  Q
    |||||||||| |||| |||||| |||||||||| |||||  | || ||||||||  ||||||||||  | ||||||||||| ||||    
T  15489 gaatatttttagatgcgtttggttgttgttttgtaaaaatagctaggatcggattagatttcggataactttttcaaaaccaaacc 15574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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