View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0884_high_1 (Length: 554)
Name: NF0884_high_1
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0884_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 29 - 483
Target Start/End: Complemental strand, 44754386 - 44753932
Alignment:
| Q |
29 |
aacatctcagcccatttcattttctgactcaaattttctcctgtactttgattttgattcccttgattggcggtgtttccgataagcgaagaaagtgctg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44754386 |
aacatctcagcccatttcattttctgactcaaattttctcctgcactttgattttgattcccttgattggtggtgtttccgataagcgaagaaagtgctg |
44754287 |
T |
|
| Q |
129 |
cagctaaagctgattgaaaagttggatctgctgtgatagcttttgttgctgcagatatagtactatcttgtaaacctacatgttgtgaaatgtttgaact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44754286 |
cagctaaagctgattgaaaagttggatctgctgtgatagcttttgttgctgcagatatagtactatcttgtaaacctacatgttgtgaaatgtttgaact |
44754187 |
T |
|
| Q |
229 |
attgttgnnnnnnngcatgtaggtttggtatatactttccattgtgttttgtctaccaaagtttaaagtgcttaggttattattgttcctattattacta |
328 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44754186 |
attgttgtttttttgcatgtaggtttggtatatactttccattgtgttttgtctaccaaagtttaaagtgcttaggttattattgttcctattattacta |
44754087 |
T |
|
| Q |
329 |
aatggttgattttgagtagtagcataattgaggaagctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaagaagggtatcttg |
428 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44754086 |
tatggttgattttgagtagtagcatagttgaggaagctattccaatgcatgggatttgattcaggagaactaaagctaagagtggaagaagggtatcttg |
44753987 |
T |
|
| Q |
429 |
gtagttggttattgttgttgtagcttgaattgaatctaacaaagggtgatgatgt |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44753986 |
gtagttggttattgttgttgtagcttgaattgaatctaacaaagggtgatgatgt |
44753932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 249 times since January 2019
Visitors: 6702