View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0884_low_12 (Length: 302)

Name: NF0884_low_12
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0884_low_12
NF0884_low_12
[»] chr4 (6 HSPs)
chr4 (1-281)||(14291606-14291886)
chr4 (1-281)||(14307655-14307935)
chr4 (88-232)||(24133325-24133469)
chr4 (40-274)||(33803857-33804091)
chr4 (6-142)||(3881729-3881865)
chr4 (126-178)||(15813211-15813263)
[»] chr6 (5 HSPs)
chr6 (54-274)||(12646029-12646249)
chr6 (6-275)||(27852955-27853224)
chr6 (21-222)||(24990681-24990882)
chr6 (21-223)||(24893854-24894056)
chr6 (48-232)||(32725506-32725690)
[»] chr7 (5 HSPs)
chr7 (9-181)||(27781636-27781808)
chr7 (57-193)||(27153204-27153340)
chr7 (4-142)||(1353792-1353930)
chr7 (48-223)||(23207911-23208086)
chr7 (3-244)||(16769962-16770203)
[»] chr2 (5 HSPs)
chr2 (20-266)||(573079-573325)
chr2 (6-175)||(177477-177646)
chr2 (93-178)||(1487402-1487487)
chr2 (42-110)||(14653713-14653781)
chr2 (6-148)||(35062959-35063101)
[»] chr3 (6 HSPs)
chr3 (21-232)||(38647197-38647408)
chr3 (40-268)||(53608334-53608562)
chr3 (40-274)||(17718392-17718626)
chr3 (40-274)||(19019621-19019855)
chr3 (76-169)||(11889809-11889902)
chr3 (21-223)||(23424431-23424633)
[»] chr1 (6 HSPs)
chr1 (3-139)||(50236562-50236698)
chr1 (21-181)||(50451870-50452030)
chr1 (63-139)||(1524984-1525060)
chr1 (82-194)||(10103756-10103868)
chr1 (102-274)||(31325048-31325220)
chr1 (3-79)||(32890489-32890565)
[»] chr8 (3 HSPs)
chr8 (93-139)||(13030218-13030264)
chr8 (6-172)||(26708706-26708872)
chr8 (63-174)||(38348449-38348560)
[»] scaffold0214 (1 HSPs)
scaffold0214 (55-172)||(8948-9065)
[»] chr5 (4 HSPs)
chr5 (45-109)||(32874499-32874563)
chr5 (48-175)||(31814624-31814750)
chr5 (6-139)||(5864756-5864888)
chr5 (207-244)||(23944927-23944964)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 14291886 - 14291606
Alignment:
Q  1 aaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14291886 aaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca 14291787  T
Q  101 aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14291786 aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattgaaggaaggtccag 14291687  T
Q  201 cttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtga 281  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14291686 cttacattatcaaaggctttctcaaagtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtga 14291606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 14307935 - 14307655
Alignment:
Q  1 aaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14307935 aaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca 14307836  T
Q  101 aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14307835 aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattgaaggaaggtccag 14307736  T
Q  201 cttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtga 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14307735 cttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtga 14307655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 24133325 - 24133469
Alignment:
Q  88 tgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgatta 187  Q
    ||||||| ||||||||||||||||| |  || || || ||||||||||||||||||||||| || || ||||| |||||||| || |||||||| ||||     
T  24133325 tgttcccgttccaaagaatagagagcgaagatgatgtaacacaatgcatgataagcttaatggtgatgtctgggaagccaaagtcgtgaaggcaagattt 24133424  T
Q  188 aaggaaggtccagcttacattatcaaaggctttctcaaggtcaag 232  Q
    |||||| | |||| | ||||||||||| ||||| ||||| |||||    
T  24133425 aaggaaagcccagttaacattatcaaacgctttttcaagatcaag 24133469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 274
Target Start/End: Complemental strand, 33804091 - 33803857
Alignment:
Q  40 gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat 139  Q
    ||||||| || |||||||| |  || |||||||| |||||| |||| ||||| |||||||| || ||||||   || || ||||  ||||||||||||||    
T  33804091 gaggatcaccctgtctgagactgtgtgaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgat 33803992  T
Q  140 aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat 239  Q
     ||||| || || || ||||| || |||||||| || | |||  | | ||| ||   |||  | |||||||||||||||||||||||||||||||||||     
T  33803991 gagcttgatggtgatgtctgggaaaccaaaatcctgcaagcaaaaattaagaaaatcccaattaacattatcaaaggctttctcaaggtcaagcttaaac 33803892  T
Q  240 gccacctgcccctttttcttctttgatctcctcat 274  Q
    |||||    || ||||||||||| ||||| |||||    
T  33803891 gccacaaatccttttttcttcttagatcttctcat 33803857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 3881865 - 3881729
Alignment:
Q  6 ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa 105  Q
    ||||||||||| |  ||||| |||||| | ||  | ||||| ||||||| ||||||||| | ||| || ||| |  |||| ||||| |||||||| |  |    
T  3881865 ttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataaga 3881766  T
Q  106 tagagagagtggaagaggtgacacaatgcatgataag 142  Q
    ||||||  ||||| |||||||||||||||||||||||    
T  3881765 tagagaaggtggaggaggtgacacaatgcatgataag 3881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 15813211 - 15813263
Alignment:
Q  126 acacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaag 178  Q
    ||||| |||||||||||||| || ||||||||||  ||||||||||| |||||    
T  15813211 acacagtgcatgataagcttgatggtaatatctgagaagccaaaatcatgaag 15813263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 54 - 274
Target Start/End: Original strand, 12646029 - 12646249
Alignment:
Q  54 ctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaa 153  Q
    ||||| ||||| || ||||| ||| || ||||  |||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||    
T  12646029 ctgagaccatgagatggcttgaaaagaggcataatgttcccattccaaaggatagaaagagtggatgaagtgacacaatgcatgataagcttaattgtaa 12646128  T
Q  154 tatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctt 253  Q
    | |||| ||| |||||||||||||||||||| | ||||||   |||  | ||||||||||| || || | |||||| |||||||| ||||| |  |||||    
T  12646129 tgtctgaaaaaccaaaatcttgaaggcatgactgaaggaaaagccaattgacattatcaaaagcctttttaaggtctagcttaaaggccacataaccctt 12646228  T
Q  254 tttcttctttgatctcctcat 274  Q
     || ||||||||||| |||||    
T  12646229 ctttttctttgatcttctcat 12646249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 27852955 - 27853224
Alignment:
Q  6 ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa 105  Q
    ||||||||||| | |||||| | |||||| ||   ||| || |||||||| || ||||| |||||||| |||| | |||| ||||| || ||||||||||    
T  27852955 ttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaagaa 27853054  T
Q  106 tagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttac 205  Q
    |||||||| | || ||||| ||||||||||| || | |||  ||||||| || || |||||||| ||||||||||| |||| ||| ||   |||| | ||    
T  27853055 tagagagaattgaggaggtaacacaatgcataatgaacttggttgtaatgtcagggaagccaaagtcttgaaggcaggatttaagaaaatcccagttaac 27853154  T
Q  206 attatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcata 275  Q
    |||||||||  | || ||||| |||||||| || ||| |    |||||||||||||| ||||| ||||||    
T  27853155 attatcaaactccttttcaagatcaagcttgaaggccgcaaaaccctttttcttcttcgatcttctcata 27853224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 24990681 - 24990882
Alignment:
Q  21 atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag 120  Q
    |||||||| ||||| ||| | || || ||||||||||| |||||||  ||||| |||||  |||| ||||| || ||||| | |||||| | |||||| |    
T  24990681 atgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttccataaaatagaaaaagtggagg 24990780  T
Q  121 aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt 220  Q
    |||||||||| |||||||| || || || || || |||||||| |||||||| |||||| | || | ||||||   ||| || ||||||||||| |||||    
T  24990781 aggtgacacagtgcatgatgagtttgatggtgatgtctggaaaaccaaaatcgtgaaggtaagacttaaggaaatcccatctgacattatcaaacgcttt 24990880  T
Q  221 ct 222  Q
    ||    
T  24990881 ct 24990882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 24893854 - 24894056
Alignment:
Q  21 atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag 120  Q
    |||||||| ||||| ||| | || || ||||||||||| ||||| |  ||||| |||||  |||| ||||| |||||||| |  || ||||  ||||| |    
T  24893854 atgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattccataatatggagaatgtggagg 24893953  T
Q  121 aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt 220  Q
    ||||||||||||||||||| ||||| || || || |||||||| ||||| || |||||||| || | ||||||   ||| || |||||||| || |||||    
T  24893954 aggtgacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaaagcttt 24894053  T
Q  221 ctc 223  Q
    |||    
T  24894054 ctc 24894056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 32725506 - 32725690
Alignment:
Q  48 ccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaa 147  Q
    |||||||||||  |||||||||||||||| |   |||| || || || ||||| | ||||||||  ||||| || ||||||||||||||||||||||| |    
T  32725506 ccttgtctgagatcatgggaaggcttaaaggagggcattttattaccgttccataaaatagagaatgtggatgatgtgacacaatgcatgataagcttga 32725605  T
Q  148 ttgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaag 232  Q
    | || || || ||||| ||||| ||  | ||||| || | ||| ||   ||| || ||||||||||| |||||||| ||||||||    
T  32725606 tggtgatgtccggaaatccaaactcaaggaggcaagaattaagaaaatcccatctgacattatcaaaagctttctccaggtcaag 32725690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 27781636 - 27781808
Alignment:
Q  9 tccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatag 108  Q
    ||||| |||| |||||| |||||||| ||  |||| || ||||||||||||||||| |  |||||||| ||| |||| |||||||| ||||| ||||| |    
T  27781636 tccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttccatagaatgg 27781735  T
Q  109 agagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggca 181  Q
    ||| |||||| ||||||||||| |||||||| ||||| || ||||||||||| || ||||| || ||||||||    
T  27781736 agaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatgaaggca 27781808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 27153340 - 27153204
Alignment:
Q  57 aggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatat 156  Q
    ||||||||  ||||||| |||||| | ||||| ||||||||||| || ||||| ||||| || ||||||||||||||||| || ||||| |||||| |||    
T  27153340 aggccatgataaggcttgaaaggaggaatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgtagtat 27153241  T
Q  157 ctggaaagccaaaatcttgaaggcatgattaaaggaa 193  Q
    || |||||||||| ||||| | ||| |||| ||||||    
T  27153240 ctagaaagccaaagtcttggaagcaagattgaaggaa 27153204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 1353792 - 1353930
Alignment:
Q  4 gtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaag 103  Q
    ||||||||||||| |  |||||||| || || ||| | ||||| |||||| |||||||||| | |||||| || |||  |||||| ||||||||| | ||    
T  1353792 gtttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaagggagacatctttttcccattcgagag 1353891  T
Q  104 aatagagagagtggaagaggtgacacaatgcatgataag 142  Q
     ||||||| |||||| ||||  || ||||||||||||||    
T  1353892 gatagagaaagtggaggaggcaacgcaatgcatgataag 1353930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 223
Target Start/End: Original strand, 23207911 - 23208086
Alignment:
Q  48 ccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaa 147  Q
    |||||||| || ||||| |  ||||| |||||  |||| ||||| || ||||| | ||| ||||  ||||| |||||||| ||||||||||| || || |    
T  23207911 ccttgtctaagaccatgtgtgggcttgaaagggggcattttgttaccgttccataaaattgagaatgtggaggaggtgacgcaatgcatgatgagtttga 23208010  T
Q  148 ttgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctc 223  Q
    | |||||||||||||| |||||||| || ||||| || | ||||||   ||| || |||||||| || ||||||||    
T  23208011 tggtaatatctggaaaaccaaaatcctggaggcaagaattaaggaaatcccatctgacattatcgaaagctttctc 23208086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 16769962 - 16770203
Alignment:
Q  3 agtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaa 102  Q
    |||||||||||||| | |||||| || ||||| ||  ||||||| |||||||  || ||||| | ||| || ||| |  |||  ||||| |||||||| |    
T  16769962 agtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccattccata 16770061  T
Q  103 gaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagct 202  Q
     |||||||| ||||||||| |  ||||| ||||| ||||| || || ||||| ||||| || |||||||| || || ||    | ||| ||    ||| |    
T  16770062 aaatagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtctgggaatccaaaatcatgcagacaattatgaagaaaatctcagtt 16770161  T
Q  203 tacattatcaaaggctttctcaaggtcaagcttaaatgccac 244  Q
     ||||||||||| ||||| ||||||||||||||||| |||||    
T  16770162 gacattatcaaaagctttttcaaggtcaagcttaaaagccac 16770203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 573325 - 573079
Alignment:
Q  20 gatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaa 119  Q
    |||||| |||||||| ||| | ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | ||||||||  || |      
T  573325 gatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattccataaaatagagaacgttggt 573226  T
Q  120 gaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctt 219  Q
    || |||||| ||||||||||||| || || || || |||||||| ||||| || |||||||| || | ||||||   ||| || |||||| |||| ||||    
T  573225 gatgtgacataatgcatgataagtttgatggtgatgtctggaaatccaaactcatgaaggcaggaattaaggaaatcccatctgacattaccaaaagctt 573126  T
Q  220 tctcaaggtcaagcttaaatgccacctgcccctttttcttctttgat 266  Q
    | || | ||| ||||| || || || | |||||| ||||| ||||||    
T  573125 tttccaagtcgagcttgaaagcaacataccccttcttcttttttgat 573079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 177646 - 177477
Alignment:
Q  6 ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa 105  Q
    |||||||| ||||||||||| |||||||| ||   ||| || |||||||| || ||||| | |||||| | |||| ||   ||||| |||||||||||||    
T  177646 ttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaagaa 177547  T
Q  106 tagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttg 175  Q
     |||||  || ||||| ||||||||||||||||| || || ||||||  ||| || || |||||||||||    
T  177546 cagagaatgttgaagaagtgacacaatgcatgatgagtttgattgtatcatccgggaaaccaaaatcttg 177477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 1487402 - 1487487
Alignment:
Q  93 ccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaag 178  Q
    |||||||| | |||||||| |||||| || || ||||| ||||| ||||||||||| |||||||| || || |||||||| |||||    
T  1487402 ccattccataaaatagagaaagtggatgaagtaacacagtgcataataagcttaatggtaatatcagggaaaccaaaatcatgaag 1487487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 14653713 - 14653781
Alignment:
Q  42 ggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagag 110  Q
    ||||| ||||||  ||||||||| |||||||| |||||  ||| |||||||||||||||||| ||||||    
T  14653713 ggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 14653781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 35062959 - 35063101
Alignment:
Q  6 ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa 105  Q
    ||||||||||| | ||||||||| || || ||  | ||||| |||||||| || ||| | | ||||||||  ||| |||||||||| |||||| | || |    
T  35062959 ttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtctaagaccacgtgtaggcttaagtggaggcatcttgttgccattctagagga 35063058  T
Q  106 tagagagagtggaagaggtgacacaatgcatgataagcttaat 148  Q
    |  ||| |||||| ||||  ||||||||||||||||| |||||    
T  35063059 tcaagaaagtggatgaggcaacacaatgcatgataagtttaat 35063101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 38647197 - 38647408
Alignment:
Q  21 atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag 120  Q
    ||||| ||||| || ||| | ||||| ||||||||||| || |||||||||||||||||  |||| || || || ||||||||||||||||  ||||| |    
T  38647197 atgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaagaatagagaaggtggatg 38647296  T
Q  121 aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt 220  Q
    | |  |||||||||||||| ||||| || || || |||||||| |||||||| || ||||| || | |||||||  |||| | ||||||||||| |||||    
T  38647297 atgaaacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaaatcatgcaggcaagaattaaggaagtcccagttgacattatcaaaagcttt 38647396  T
Q  221 ctcaaggtcaag 232  Q
     || ||||||||    
T  38647397 ttccaggtcaag 38647408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 268
Target Start/End: Original strand, 53608334 - 53608562
Alignment:
Q  40 gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat 139  Q
    ||||||| || |||||||| ||||| |||||| | |||| | |||| ||||| |||||||||||||||||||  || || ||||  ||||||||||||||    
T  53608334 gaggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgat 53608433  T
Q  140 aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat 239  Q
     ||||| || || || ||||| || |||||||| || |||||  | | ||| ||   |||  | ||||||||||| ||||||||||| || ||||| ||     
T  53608434 gagcttgatggtgatgtctgggaaaccaaaatcctgtaggcaaaaattaagaaaatcccaattgacattatcaaaagctttctcaagatcgagcttgaaa 53608533  T
Q  240 gccacctgcccctttttcttctttgatct 268  Q
    ||||| |  || |||||||||||||||||    
T  53608534 gccacatagccttttttcttctttgatct 53608562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 274
Target Start/End: Original strand, 17718392 - 17718626
Alignment:
Q  40 gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat 139  Q
    ||||||| || |||| ||| ||||| |||||||| || ||| |||| ||||| |||||||| | ||||||||  ||||| ||||  ||||||||||||||    
T  17718392 gaggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgat 17718491  T
Q  140 aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat 239  Q
     ||||| || || |  || || || |||||||| || || || || | ||| ||   |||  | |||||||||||||||||||||||||| ||||| ||     
T  17718492 gagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaa 17718591  T
Q  240 gccacctgcccctttttcttctttgatctcctcat 274  Q
    ||||| |  || ||||||||||| ||||| |||||    
T  17718592 gccacataaccttttttcttcttagatcttctcat 17718626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 274
Target Start/End: Original strand, 19019621 - 19019855
Alignment:
Q  40 gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat 139  Q
    ||||||| || |||| ||| ||||| |||||||| || ||| |||| ||||| |||||||| | ||||||||  ||||| ||||  ||||||||||||||    
T  19019621 gaggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgat 19019720  T
Q  140 aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat 239  Q
     ||||| || || |  || || || |||||||| || || || || | ||| ||   |||  | |||||||||||||||||||||||||| ||||| ||     
T  19019721 gagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaa 19019820  T
Q  240 gccacctgcccctttttcttctttgatctcctcat 274  Q
    ||||| |  || ||||||||||| ||||| |||||    
T  19019821 gccacataaccttttttcttcttagatcttctcat 19019855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 11889809 - 11889902
Alignment:
Q  76 aaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaa 169  Q
    ||||| |||| |||||||||||||| || || |||| |||||| ||||||||||| |||||||| ||||| || ||||||||||| || |||||    
T  11889809 aaggaggcattttgttcccattccataggatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaa 11889902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 23424633 - 23424431
Alignment:
Q  21 atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag 120  Q
    |||||||| ||||| ||| | || || ||||||||||| ||||| |  ||||| |||||  |||| ||||| || ||||| |  || ||||  ||||| |    
T  23424633 atgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttccataatattgagaatgtggagg 23424534  T
Q  121 aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt 220  Q
    ||||||||||||| ||||| ||||| || || || |||||||| ||||| || |||||||| || | ||||||   ||| || |||||||| || |||||    
T  23424533 aggtgacacaatgtatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaatgcttt 23424434  T
Q  221 ctc 223  Q
    |||    
T  23424433 ctc 23424431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 50236562 - 50236698
Alignment:
Q  3 agtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaa 102  Q
    ||||| |||||||| | ||||||||||||||| ||  | ||||| |||| |||||||||||| | |||||| |||||  ||||||||||||| ||||| |    
T  50236562 agtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgttcccgttccata 50236661  T
Q  103 gaatagagagagtggaagaggtgacacaatgcatgat 139  Q
      ||||||   ||||  |||| |||||||||||||||    
T  50236662 agatagagtaggtgggtgaggagacacaatgcatgat 50236698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 50452030 - 50451870
Alignment:
Q  21 atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag 120  Q
    ||||| |||||||| ||  | ||||| ||||||| ||||||||| | ||| || ||| |  |||| ||||| |||||||| |  ||||||| |||||| |    
T  50452030 atgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataagatagagaaagtggagg 50451931  T
Q  121 aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggca 181  Q
    |||||||||||||||||||||| || || || || || ||||| ||||| || ||||||||    
T  50451930 aggtgacacaatgcatgataagtttgatggtgatgtccggaaaaccaaactcatgaaggca 50451870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 1525060 - 1524984
Alignment:
Q  63 tgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat 139  Q
    ||||||||||| |||||| | |  ||||| |||||||||||||||||||  |  | |||||| ||||||||||||||    
T  1525060 tgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgat 1524984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 10103756 - 10103868
Alignment:
Q  82 gcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggca 181  Q
    |||| ||||| || ||||| | |||||||| ||| ||  | ||||| |||||||||||||| || || || ||||||| ||| ||||| |||||||||||    
T  10103756 gcattttgttaccgttccataaaatagagaaagttgataaagtgacgcaatgcatgataagtttgatggtgatatctgaaaatccaaactcttgaaggca 10103855  T
Q  182 tgattaaaggaag 194  Q
     || | |||||||    
T  10103856 agaattaaggaag 10103868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 274
Target Start/End: Original strand, 31325048 - 31325220
Alignment:
Q  102 agaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagc 201  Q
    ||||||||||  ||||| || | ||||||  ||||||| ||||| ||||| || |||||||| || ||||| || ||||| || | ||||||   |||      
T  31325048 agaatagagaaggtggatgacgagacacagcgcatgatgagcttgattgtgatgtctggaaaaccgaaatcatggaggcaagaattaaggaaatcccaat 31325147  T
Q  202 ttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcat 274  Q
    | ||||||||||| |||||||| |||||||| || || || || |  ||||| |||||||| ||||| |||||    
T  31325148 tgacattatcaaaagctttctccaggtcaagtttgaaagctacgtaacccttcttcttcttggatcttctcat 31325220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 32890565 - 32890489
Alignment:
Q  3 agtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaagg 79  Q
    ||||||||||| || |  ||||| ||||| || ||| | ||||| ||||||||||| || |||||||||||||||||    
T  32890565 agtttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagg 32890489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 13030264 - 13030218
Alignment:
Q  93 ccattccaaagaatagagagagtggaagaggtgacacaatgcatgat 139  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  13030264 ccattccaaaggatagaaagagttgaagaggtgacacaatgcatgat 13030218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 26708706 - 26708872
Alignment:
Q  6 ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa 105  Q
    ||||||||||| |  |||||||||||||| ||| |||| || || || |  || ||||| || ||||||||  || | | |||||| |||||||| ||||    
T  26708706 ttttccatacacagtatgaaaaggtaaggagagagagggtcaccctggcgaagaccatgagatggcttaaattgaggaagcttgtttccattccatagaa 26708805  T
Q  106 tagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatc 172  Q
    | |||| ||| || || |||||||||||||| || |||||  | ||||| ||||| |||||||||||    
T  26708806 ttgagaaagtagatgaagtgacacaatgcataatgagcttgctggtaatttctgggaagccaaaatc 26708872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 38348560 - 38348449
Alignment:
Q  63 tgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaa 162  Q
    ||||||||||| ||||||  ||   |||| ||||||||||| |||||||  ||||  ||||| |||||||||||||| ||||| || || || |||||||    
T  38348560 tgggaaggcttgaaaggagacaatctgttgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgatggtgatgtctggaa 38348461  T
Q  163 agccaaaatctt 174  Q
    | || |||||||    
T  38348460 aaccgaaatctt 38348449  T

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Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 9065 - 8948
Alignment:
Q  55 tgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaat 154  Q
    |||||||||| |||||||  |||||| ||| | | || |||||||||||||||||||   |||| ||||| || ||||||||||| ||||| || ||  |    
T  9065 tgaggccatgagaaggctcgaaaggaggcagcctattaccattccaaagaatagagaatctggatgaggtaacgcaatgcatgatgagcttgatggtggt 8966  T
Q  155 atctggaaagccaaaatc 172  Q
    ||| || |||||||||||    
T  8965 atccgggaagccaaaatc 8948  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 32874499 - 32874563
Alignment:
Q  45 tctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaataga 109  Q
    |||||||| | ||||||||| |||||||| |||||| ||| |||||||||||| ||||| |||||    
T  32874499 tctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaaggataga 32874563  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 31814750 - 31814624
Alignment:
Q  48 ccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaa 147  Q
    ||||||||||| ||||| || |||||||| ||  |||| ||||| ||||||||||| ||||| | ||| || ||||  |||||||||||||| ||||| |    
T  31814750 ccttgtctgagaccatgagagggcttaaatggg-gcattttgttaccattccaaaggatagaaaaagtagatgaggaaacacaatgcatgatgagcttga 31814652  T
Q  148 ttgtaatatctggaaagccaaaatcttg 175  Q
    | || || | ||| |||||||| |||||    
T  31814651 tagtgatgtatgggaagccaaagtcttg 31814624  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 5864756 - 5864888
Alignment:
Q  6 ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa 105  Q
    ||||||||| |||||||||| ||||| ||| | |  ||||| |||||||| || ||||| | |||||| ||  || |||||| |||||||||  | || |    
T  5864756 ttttccatatagatgatgaagaggtagggcaaagc-ggatcaccttgtctcagaccatgagtaggcttgaactgaagcatctcgttcccattgtagagga 5864854  T
Q  106 tagagagagtggaagaggtgacacaatgcatgat 139  Q
    |||||| ||||||  |||| ||||||||||||||    
T  5864855 tagagaaagtggagaaggtaacacaatgcatgat 5864888  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 23944964 - 23944927
Alignment:
Q  207 ttatcaaaggctttctcaaggtcaagcttaaatgccac 244  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  23944964 ttatcaaaggatttctcaaggtcaagcttaaacgccac 23944927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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