View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0884_low_14 (Length: 255)
Name: NF0884_low_14
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0884_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 32026810 - 32026594
Alignment:
| Q |
11 |
aatatcaccaaccgtttttt-agtaacattgttcaagnnnnnnntaactaatgtaacagagtcttttcatcaataacatgaaccttaatcatgtaactat |
109 |
Q |
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| T |
32026810 |
aatatcaccaaccgtttttttagtaacattgttcaagaaaaaaataactaatgtaagagagtcttttcatcaataacacgaaccttaatcatgtaactat |
32026711 |
T |
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| Q |
110 |
atgtacattaaaaaattaacaattattactttattaatgggaagtaatattttaacgacctacctatataatcatggctaaagataataggaaaaattgt |
209 |
Q |
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| T |
32026710 |
atgtacattaaaaaattaacaattattactttattaatgggaagtaatattttaacgacctacctatataatcatggctaaagataataggaaaaattgt |
32026611 |
T |
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| Q |
210 |
attacccacctaggaaa |
226 |
Q |
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| T |
32026610 |
attacgcacctaggaaa |
32026594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 32027405 - 32027522
Alignment:
| Q |
81 |
aataacatgaaccttaatcatgtaactatatgtacattaaaaaattaacaattattactttattaatgggaagtaatattttaacgacctacctatataa |
180 |
Q |
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||||||||||||||||||| |||| ||||| |||||| |||||||||||| || |||||||||||| | ||||||| || |||||||||||||| |
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| T |
32027405 |
aataacatgaaccttaatcgtgta-------gtacaataaaaatttaacaattatttctatattaatgggaaatcatattttcacaacctacctatataa |
32027497 |
T |
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| Q |
181 |
tcatggctaaagataataggaaaaa |
205 |
Q |
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|||| | ||| |||||||| ||||| |
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| T |
32027498 |
tcatagataatgataatagaaaaaa |
32027522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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