View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0884_low_16 (Length: 251)
Name: NF0884_low_16
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0884_low_16 |
 | |
|
| [»] chr5 (9 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 30751502 - 30751276
Alignment:
| Q |
29 |
cctacaaacacccaatcagtaataatggaaccttgcaag----ttgcataaatctgtggttgaaaatacgcctacgtacgtgaatgttttgctcacaatt |
124 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30751502 |
cctacaaacacctaatcaataataatggaaccttgcaagcaagttgcataaatctgtggttgaaaatacgcctacgtacgtgaatgttt-gctcacaatt |
30751404 |
T |
|
| Q |
125 |
attgaacacctacttgctgagttcctactaccattgcttttattctcaaaggtctccagcttggttcagtactcactc-ttctaaacaaatttctcatca |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
30751403 |
attgaacacctacttgctgagttcctactaccattgcttttattctcaaaggtctccagcttggttcagcactcactctttctaaactaatttctcatca |
30751304 |
T |
|
| Q |
224 |
tcttatcatttgactttcaactctttaa |
251 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
30751303 |
tcttatcatttcactttcaactctttaa |
30751276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 30062135 - 30062001
Alignment:
| Q |
118 |
cacaattattgaacacctacttgctgagttcctactaccattgcttttattctcaaaggtctccagcttggttcagtactcactc-ttctaaacaaattt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30062135 |
cacaattattgaacacctacttgctgagttcctactaccattgcatttattctcaaaggtctccagcttggttcagtactcactctttctaaacaaattt |
30062036 |
T |
|
| Q |
217 |
ctcatcatcttatcatttgactttcaactctttaa |
251 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
30062035 |
ctcatcatcttatcatttcactttcaactctttaa |
30062001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 30711769 - 30711889
Alignment:
| Q |
112 |
tttgctcacaattattgaacacctacttg-ctgagttcctactaccattgcttttattctcaaaggtctccagcttggttcagtactcactct-tctaaa |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| || ||||| |||||| |||||| |||||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
30711769 |
tttgctcacaattattgaccacctacttttctgactttctactttcattgcatttattttcaaaggtctccagcttggttcagcactcattctatctaaa |
30711868 |
T |
|
| Q |
210 |
caaatttctcatcatcttatc |
230 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
30711869 |
ctaatttctcatcttcttatc |
30711889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 30240668 - 30240799
Alignment:
| Q |
43 |
atcagtaataatggaaccttgcaag----ttgcataaatctgtggttgaaaatacgcctacgtacgtgaatgttttgctcacaattattgaacacctact |
138 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| ||||||| |||||| |||||| | |||||||| ||||||||||||||| |||||| | |
|
|
| T |
30240668 |
atcaataataatggaaccttgcaagcaagttgcataaatttgtggttaaaaatatgcctactt----gaatgttt-gctcacaattattgatcacctagt |
30240762 |
T |
|
| Q |
139 |
tgctgagttcctactaccattgcttttattctcaaag |
175 |
Q |
| |
|
||| || |||||||||||||||| ||||||||||||| |
|
|
| T |
30240763 |
tgccgacttcctactaccattgcatttattctcaaag |
30240799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 30336886 - 30336987
Alignment:
| Q |
131 |
cacctacttgctgagttcctactaccattgcttttattctcaaaggtc-tccagcttggttcagtactcactct-tctaaacaaatttctcatcatctta |
228 |
Q |
| |
|
||||||| |||||| || ||||| |||||| |||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||||||| || ||||| |
|
|
| T |
30336886 |
cacctacatgctgactttctactttcattgcatttattttcaaaggtcctccagcttggttcaacactcattctatctaaacaaatttctcgtcttctta |
30336985 |
T |
|
| Q |
229 |
tc |
230 |
Q |
| |
|
|| |
|
|
| T |
30336986 |
tc |
30336987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 30485146 - 30485045
Alignment:
| Q |
131 |
cacctacttgctgagttcctactaccattgcttttattctcaaaggtc-tccagcttggttcagtactcactct-tctaaacaaatttctcatcatctta |
228 |
Q |
| |
|
||||||| |||||| || ||||| |||||| |||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||||||| || ||||| |
|
|
| T |
30485146 |
cacctacatgctgactttctactttcattgcatttattttcaaaggtcctccagcttggttcaacactcattctatctaaacaaatttctcgtcttctta |
30485047 |
T |
|
| Q |
229 |
tc |
230 |
Q |
| |
|
|| |
|
|
| T |
30485046 |
tc |
30485045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 29873934 - 29873823
Alignment:
| Q |
112 |
tttgctcacaattattgaacacctacttgctgagttcctactaccattgcttttattctcaaaggtctccagcttggttcagtactcact-cttctaaac |
210 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| ||| || || || |||||| ||||||||||||||||||| |||| ||| || ||||| | | || |||| |
|
|
| T |
29873934 |
tttgctcataattattgagcacctgcttgttgatttgctgctctcattgcatttattctcaaaggtctcctgcttagttaagcactcattccatcgaaac |
29873835 |
T |
|
| Q |
211 |
aaatttctcatc |
222 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29873834 |
aaatttctcatc |
29873823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 30675543 - 30675696
Alignment:
| Q |
29 |
cctacaaacacccaatcagtaataatggaaccttgcaag----ttgcataaatctgtggttgaaaatacgcctacgtacgtgaatgttttgctcacaatt |
124 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| || | | ||||||| |||| |||||||||| |
|
|
| T |
30675543 |
cctagaaacacccaatca---ataatggaaccttgcaagcaagttgcataaacttgtggttgaaaatgtgcgtccc-acgtgaacgttt-gctcacaatt |
30675637 |
T |
|
| Q |
125 |
attgaacacc-tactt-gctgagttcctactaccattgcttttattctcaaaggtctcc |
181 |
Q |
| |
|
||||| |||| ||||| ||||| || ||||| |||||| ||||||||||||||||||| |
|
|
| T |
30675638 |
attgaccaccctactttgctgactttctactttcattgcatttattctcaaaggtctcc |
30675696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 29855126 - 29855078
Alignment:
| Q |
34 |
aaacacccaatcagtaataatggaaccttgcaagttgcataaatctgtggtt |
85 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
29855126 |
aaacacccaatca---atattggaaccttgcaagttgcataaatgtgtggtt |
29855078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 26709078 - 26709015
Alignment:
| Q |
113 |
ttgctcacaattattgaacacctacttgctgagttcctactaccattgc-ttttattctcaaag |
175 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
26709078 |
ttgctcacaattattgaacaactacttgctgacttcctactaccattgcattttattctcaaag |
26709015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 20294845 - 20294938
Alignment:
| Q |
29 |
cctacaaacacccaatcagtaataatggaac----cttgcaagttgcataaatctgtggttgaaaatacgcctacgtacgtgaatgttttgctcacaatt |
124 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
20294845 |
cctacaaacacccaatcgataataatggaacgtggcaagcaagttgcataaatttgtggttgaaaatacgc-----tacgtgaatg-tttgctcacaatt |
20294938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1452 times since January 2019
Visitors: 6712