View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0884_low_18 (Length: 238)

Name: NF0884_low_18
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0884_low_18
NF0884_low_18
[»] chr1 (8 HSPs)
chr1 (5-226)||(35162929-35163150)
chr1 (5-217)||(30403149-30403361)
chr1 (5-217)||(30409706-30409918)
chr1 (5-217)||(29394304-29394516)
chr1 (14-98)||(29393952-29394036)
chr1 (2-98)||(35163418-35163514)
chr1 (1-98)||(30402784-30402881)
chr1 (1-98)||(30409341-30409438)
[»] chr8 (6 HSPs)
chr8 (5-217)||(11143693-11143905)
chr8 (2-217)||(1604108-1604323)
chr8 (1-98)||(11144173-11144270)
chr8 (2-98)||(1661496-1661592)
chr8 (152-217)||(1661604-1661669)
chr8 (12-65)||(44551873-44551925)
[»] chr3 (2 HSPs)
chr3 (5-217)||(55040378-55040590)
chr3 (2-98)||(55040014-55040110)
[»] chr7 (3 HSPs)
chr7 (39-217)||(13947648-13947826)
chr7 (2-98)||(13948053-13948149)
chr7 (22-79)||(1972595-1972652)
[»] chr5 (2 HSPs)
chr5 (2-217)||(9260874-9261089)
chr5 (2-98)||(9260511-9260607)
[»] chr4 (2 HSPs)
chr4 (82-222)||(46623660-46623800)
chr4 (16-79)||(36892665-36892728)
[»] chr6 (3 HSPs)
chr6 (112-217)||(2311861-2311966)
chr6 (2-58)||(32445856-32445912)
chr6 (15-65)||(14986953-14987002)
[»] chr2 (1 HSPs)
chr2 (16-79)||(26450122-26450185)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 35163150 - 35162929
Alignment:
Q  5 agaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnn 104  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          
T  35163150 agaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcactttatgtaaagtttttt 35163051  T
Q  105 natttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163050 tatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 35162951  T
Q  205 gatgatagtggctgatgatgtc 226  Q
    ||||||||||||| ||||||||    
T  35162950 gatgatagtggctcatgatgtc 35162929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 30403149 - 30403361
Alignment:
Q  5 agaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnn 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  30403149 agaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatt 30403248  T
Q  105 natttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403249 tatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 30403348  T
Q  205 gatgatagtggct 217  Q
    |||||||||||||    
T  30403349 gatgatagtggct 30403361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 30409706 - 30409918
Alignment:
Q  5 agaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnn 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  30409706 agaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatt 30409805  T
Q  105 natttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409806 tatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 30409905  T
Q  205 gatgatagtggct 217  Q
    |||||||||||||    
T  30409906 gatgatagtggct 30409918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 29394304 - 29394516
Alignment:
Q  5 agaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnn 104  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  29394304 agaacacaccacgaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatt 29394403  T
Q  105 natttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394404 tatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 29394503  T
Q  205 gatgatagtggct 217  Q
    |||||||||||||    
T  29394504 gatgatagtggct 29394516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 29393952 - 29394036
Alignment:
Q  14 cacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29393952 cacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaag 29394036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 35163514 - 35163418
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    |||||| || ||||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35163514 tcgagagcacaccacaaaaaacataaaccacttcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaag 35163418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 30402784 - 30402881
Alignment:
Q  1 ttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    ||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| |||| ||||| |||||||||||||||    
T  30402784 ttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggacagtctttttcaatttatgtaaag 30402881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 30409341 - 30409438
Alignment:
Q  1 ttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    ||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| |||| ||||| |||||||||||||||    
T  30409341 ttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggacagtctttttcaatttatgtaaag 30409438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 11143905 - 11143693
Alignment:
Q  5 agaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnn 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  11143905 agaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatt 11143806  T
Q  105 natttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143805 tatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 11143706  T
Q  205 gatgatagtggct 217  Q
    |||||||||||||    
T  11143705 gatgatagtggct 11143693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 1604108 - 1604323
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnn 101  Q
    ||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  1604108 tcgagaacacaccacaaaaaacagaaaccacatcgacaaagtccaccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagttt 1604207  T
Q  102 nnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattat 201  Q
        ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604208 atttatttgcacactattttatcataacattgacaatacttgttgtgaaaatttacatctaatggaactatatttcatattagttattcacacccattat 1604307  T
Q  202 cgtgatgatagtggct 217  Q
    ||||||||||||||||    
T  1604308 cgtgatgatagtggct 1604323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11144270 - 11144173
Alignment:
Q  1 ttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    ||||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  11144270 ttcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacagtctttatcaatttatgtaaag 11144173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 1661496 - 1661592
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    |||||| || |||| |||||||| ||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1661496 tcgagagcacaccataaaaaacataaaccacctcgacgaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaag 1661592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 1661604 - 1661669
Alignment:
Q  152 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggct 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1661604 atttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgatagtggct 1661669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 44551925 - 44551873
Alignment:
Q  12 accacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 65  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  44551925 accacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 44551873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 55040378 - 55040590
Alignment:
Q  5 agaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnn 104  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||          
T  55040378 agaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaaatatcactattttctcaaaagacaatcttcatcaatttatgtaaagtttatt 55040477  T
Q  105 natttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgt 204  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55040478 tatttgcacactattttatcataacattgacaatacttgttatgcaaatttacatctaatgaaactatatttcatattagttattcacacccattatcgt 55040577  T
Q  205 gatgatagtggct 217  Q
    |||||||||||||    
T  55040578 gatgatagtggct 55040590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 55040014 - 55040110
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    |||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  55040014 tcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggataatctttatcaatttatgtaaag 55040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 39 - 217
Target Start/End: Complemental strand, 13947826 - 13947648
Alignment:
Q  39 aaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaat 138  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  13947826 aaagtataccaaaactatcattattttctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaat 13947727  T
Q  139 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947726 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggct 13947648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 13948149 - 13948053
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    ||||||||| ||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13948149 tcgagaacacaccacaaaaaacataaaccacctcgacaaagtcccccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaag 13948053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 1972652 - 1972595
Alignment:
Q  22 acagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 79  Q
    ||||||||||| |||| |||||  |||||||||| |||||||||||||| ||||||||    
T  1972652 acagaaaccacttcgaaaaagtccaccaaaactaccactattttctcaacagacaatc 1972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 9260874 - 9261089
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagnnn 101  Q
    |||||| || |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||       
T  9260874 tcgagagcacaccacaaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattttctcaacagacaatctctatcaatttatgtaaagttt 9260973  T
Q  102 nnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattat 201  Q
        |||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  9260974 atttatttgcacactattttatcataacatagacaatacctattgtgcaaatttagatctaatggaactatatttcatattagttattcactcccattat 9261073  T
Q  202 cgtgatgatagtggct 217  Q
    ||||||||| ||||||    
T  9261074 cgtgatgattgtggct 9261089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 9260511 - 9260607
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaag 98  Q
    |||||| || || |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  9260511 tcgagagcacactacaaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattttctcaaaagacaatctttatcaatttatataaag 9260607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 46623660 - 46623800
Alignment:
Q  82 tatcaatttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatat 181  Q
    |||||||||||||||||       |||| ||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||     
T  46623660 tatcaatttatgtaaagtttatttatttacacactattttatcataacaaagacaatacttgttgtgcaaatttaggtctaatggaactatatttcataa 46623759  T
Q  182 tagttattcacacccattatcgtgatgatagtggctgatga 222  Q
    |||||| ||||||||||||| ||||||||||||||| ||||    
T  46623760 tagttaatcacacccattatggtgatgatagtggctcatga 46623800  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 36892728 - 36892665
Alignment:
Q  16 caaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 79  Q
    ||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  36892728 caaaagacagaaaccacttcgacaaagtccaccaaaactatcactattttctcaacagacaatc 36892665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 2311861 - 2311966
Alignment:
Q  112 acactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgata 211  Q
    |||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||     
T  2311861 acactattttatcataacatagacaatacctattgtgcaaatttagatctaatggaactatatttgatattaggtattcactcccattatcgtgatgatt 2311960  T
Q  212 gtggct 217  Q
    ||||||    
T  2311961 gtggct 2311966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 32445912 - 32445856
Alignment:
Q  2 tcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatca 58  Q
    |||||| || ||||||||||||||||||||||||||||||||  |||||||||||||    
T  32445912 tcgagagcacaccacaaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 14986953 - 14987002
Alignment:
Q  15 acaaaaaacagaaaccacctcgacaaagtataccaaaactatcactatttt 65  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  14986953 acaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 14987002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 26450185 - 26450122
Alignment:
Q  16 caaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 79  Q
    ||||| ||||||||||| ||||||||||  |||||||||| |||||||||||||| ||||||||    
T  26450185 caaaagacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 26450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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