View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0884_low_19 (Length: 231)

Name: NF0884_low_19
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0884_low_19
NF0884_low_19
[»] chr5 (19 HSPs)
chr5 (1-221)||(30337232-30337452)
chr5 (1-221)||(30061551-30061771)
chr5 (1-221)||(30712135-30712355)
chr5 (1-221)||(30750825-30751045)
chr5 (1-221)||(30484580-30484800)
chr5 (1-221)||(30675995-30676215)
chr5 (1-167)||(29854544-29854710)
chr5 (1-167)||(29873407-29873573)
chr5 (80-221)||(30436992-30437133)
chr5 (1-160)||(30207762-30207921)
chr5 (1-156)||(30401321-30401476)
chr5 (1-161)||(30241100-30241245)
chr5 (5-156)||(30329552-30329700)
chr5 (5-135)||(17417379-17417509)
chr5 (61-160)||(30476615-30476714)
chr5 (101-160)||(29608335-29608394)
chr5 (70-160)||(30520401-30520491)
chr5 (70-160)||(30560741-30560831)
chr5 (1-49)||(30437149-30437197)
[»] chr4 (2 HSPs)
chr4 (1-221)||(20295289-20295509)
chr4 (2-160)||(52353201-52353359)
[»] chr7 (1 HSPs)
chr7 (80-221)||(26708511-26708652)
[»] chr3 (1 HSPs)
chr3 (1-221)||(25292654-25292874)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30337232 - 30337452
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337232 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 30337331  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337332 aacaggttgaaagagattacaaggaggttagataatattgctgaacgtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 30337431  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||||||||||||    
T  30337432 aagtagctgaagggcgccaaa 30337452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30061771 - 30061551
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  30061771 gctcgatgatatccttgatgagtactcgatcaagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcatgtttcgccatgagattggt 30061672  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30061671 aacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggcactcttagggaaatcccagatc 30061572  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||||||||||||    
T  30061571 aagtagctgaagggcgccaaa 30061551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30712135 - 30712355
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||    
T  30712135 gctcgatgatatccttgatgagtactcgatcgagtcttttcgactgagaggatttacctctttcaaactaaagaacatcatgtttcgccatgagattggt 30712234  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30712235 aacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 30712334  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||||||||||||    
T  30712335 aagtagctgaagggcgccaaa 30712355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30751045 - 30750825
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||    
T  30751045 gctcgatgatatccttgatgagtactcgattaagtcttgtcgactgagaggatgtacctctttcaaaccaaagaacatcatgtttcgccatgagattggt 30750946  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750945 aacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 30750846  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||||||||||||    
T  30750845 aagtagctgaagggcgccaaa 30750825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30484800 - 30484580
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  30484800 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaagaacatcatgtttcgccatgagattggt 30484701  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  30484700 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagaaagaacaagttttctctacagacgggtgaaactcttagggtaatcccagatc 30484601  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||||||||||||    
T  30484600 aagtagctgaagggcgccaaa 30484580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30675995 - 30676215
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    |||||||||||||||||||||||| || ||| ||||| ||| ||| |||||||   ||||| |||||||||||||||||| |||||||  |||||||||     
T  30675995 gctcgatgatatccttgatgagtattcaatcaagtctggtcaacttagaggatcatcctctctcaaaccaaagaacatcatgtttcgcagtgagatcggc 30676094  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30676095 aacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 30676194  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||||||||||||    
T  30676195 aagtagctgaagggcgccaaa 30676215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29854710 - 29854544
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    |||||||||||||||||||||||  || ||| ||||| ||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||     
T  29854710 gctcgatgatatccttgatgagtgttcaatcaagtctggtcaacttagaggattaacctctttcaaaccaaagaacatcatgtttcgccatgagatcggc 29854611  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctac 167  Q
    |||||||||||||||||||||||||  || |||||||||||||| |||||||||||||||| |||||    
T  29854610 aacaggttgaaagagattacaaggaaattggatgatattgctgatagtaagaacaagttttttctac 29854544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29873573 - 29873407
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||||||||||||||||||||| ||||||| ||||| ||| ||| |||||||  | |||||| |||||||| ||||||| |||||||| |||||||||     
T  29873573 gctcgatgatatccttgatgagtgctcgatcaagtctggtcaacttagaggatcaatctcttttaaaccaaataacatcatgtttcgccttgagatcggc 29873474  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctac 167  Q
    |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||    
T  29873473 aacaggttgaaagagattacaaggagattggatgatattgctgatagtaagaacaagttttttctac 29873407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 30437133 - 30436992
Alignment:
Q  80 aagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaa 179  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||  |||||||||| ||||||||||||||||||| || | ||||| ||    
T  30437133 aagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgggtgtaa 30437034  T
Q  180 ctcttagggaaatcccagatcaagtagctgaagggcgccaaa 221  Q
    |||||||||||| |||||||||||  ||||||||||||||||    
T  30437033 ctcttagggaaagcccagatcaagctgctgaagggcgccaaa 30436992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 30207921 - 30207762
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||||||||||||||||||||| |||||||||||||  |||||| |  |  |   | ||||||||||||||||||||||  ||| | | |||||| ||     
T  30207921 gctcgatgatatccttgatgagtgctcgatcgagtctgctcgacttattgcctcatcatctttcaaaccaaagaacatcattttttgtcgtgagattggc 30207822  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 160  Q
    || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30207821 aaaagattgaaagagattacaaggaggttagatgatattgctgaaagtaaaaacaagttt 30207762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 30401476 - 30401321
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||  |||| |    ||||||||| ||||||||||||  |||||||| | |||||||     
T  30401476 gctcgatgatatccttgatgagtgttcgatcgagtctgctcgacttggaggctcattctctttcaacccaaagaacatcgtgtttcgccgtcagatcggc 30401377  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa 156  Q
    ||||||||||||||||||||||| || || |||||||||||||| | |||||||||    
T  30401376 aacaggttgaaagagattacaagaagattggatgatattgctgatattaagaacaa 30401321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30241100 - 30241245
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||| ||||               |||||||||||||||||||    
T  30241100 gctcgatgatatccttgatgagtgctcgatcaagtctagtcgactgagaggattaacctctctcaa---------------gtttcgccatgagatcggt 30241184  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagtttt 161  Q
    ||||||||| |||||||||   ||||||| |||||||||||||| || | ||| |||||||    
T  30241185 aacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaagtttt 30241245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 30329552 - 30329700
Alignment:
Q  5 gatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaaca 104  Q
    ||||||||||||||||||| || |||||||||| ||||| | ||||| |   ||||||||||||||||||||||    |||||||||||||||   || |    
T  30329552 gatgatatccttgatgagtgcttgatcgagtctggtcgaattagaggctcatcctctttcaaaccaaagaacattgtatttcgccatgagatc---aata 30329648  T
Q  105 ggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa 156  Q
    |||||||||| ||||| || || |||||| | |||||||||| |||||||||    
T  30329649 ggttgaaagaaattaccagaagattagataagattgctgaaaataagaacaa 30329700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 17417379 - 17417509
Alignment:
Q  5 gatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaaca 104  Q
    |||||||| |||||||||| ||| ||||||||| |||| || ||||| |   ||| ||||||||||||||||||||  ||||||| |||||||||  | |    
T  17417379 gatgatattcttgatgagtgctcaatcgagtctggtcggcttagaggctcatcctatttcaaaccaaagaacatcatatttcgccgtgagatcggccaaa 17417478  T
Q  105 ggttgaaagagattacaaggaggttagatga 135  Q
    ||||| |||||||||||||||| || |||||    
T  17417479 ggttggaagagattacaaggagatttgatga 17417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 30476714 - 30476615
Alignment:
Q  61 tttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 160  Q
    |||||| | |||||||||   |||||||| ||| ||||| || ||||||||||| ||||||||||| || ||| | ||||||||||||||  ||||||||    
T  30476714 tttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggttgaaagaaattacaaggagattcgatcaaattgctgaaagtaaagacaagttt 30476615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 29608335 - 29608394
Alignment:
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 160  Q
    |||||||||||||||||||||||||| || ||| | |||  |||||||||||| ||||||    
T  29608335 aacaggttgaaagagattacaaggagatttgatcaaatttttgaaagtaagaaaaagttt 29608394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 30520401 - 30520491
Alignment:
Q  70 aaagaacatcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 160  Q
    |||||| |||| |||||||||| | || || |  ||||| ||||| |||||||  || || |||||||||||||||||||| |||||||||    
T  30520401 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt 30520491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 30560741 - 30560831
Alignment:
Q  70 aaagaacatcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 160  Q
    |||||| |||| |||||||||| | || || |  ||||| ||||| |||||||  || || |||||||||||||||||||| |||||||||    
T  30560741 aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt 30560831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30437197 - 30437149
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgaga 49  Q
    ||||||||| |||||||||||||  |||||| ||||| |||||||||||    
T  30437197 gctcgatgacatccttgatgagtgttcgatcaagtctagtcgactgaga 30437149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20295289 - 20295509
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||    
T  20295289 gctcggtgatatccttgatgagtactcgatcgagtctggtcgactgagaggatttaactctttcaaaccaatgaacatcgcgtttcgccatgagatcggt 20295388  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20295389 agcaggtttaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 20295488  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||||||||||||    
T  20295489 aagtagctgaagggcgccaaa 20295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 52353359 - 52353201
Alignment:
Q  2 ctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggta 101  Q
    |||||||||||||||||||| |  |||||| | ||| ||||||| |  || ||  | || ||||||||||| || ||   |||||| ||||| || || |    
T  52353359 ctcgatgatatccttgatgaatgttcgatcaaatctagtcgacttatgggtttatcgtcattcaaaccaaaaaatattgtgtttcgtcatgatattggaa 52353260  T
Q  102 acaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt 160  Q
    |||| |||||||| ||||||||||| || ||| |  |||||||||| ||||||||||||    
T  52353259 acagattgaaagaaattacaaggagattcgatcaagttgctgaaaggaagaacaagttt 52353201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 26708652 - 26708511
Alignment:
Q  80 aagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaa 179  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||  |||||||||| |||||||||||||||||||||||| ||||||||    
T  26708652 aagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctacagacgggtggaa 26708553  T
Q  180 ctcttagggaaatcccagatcaagtagctgaagggcgccaaa 221  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  26708552 ctcttagggaaagcccatatcaagtagctgaagggcgccaaa 26708511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25292654 - 25292874
Alignment:
Q  1 gctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggt 100  Q
    |||||||||||||||||||||||  | |||| | ||| ||||||| ||||| |   |||||||||||||||||||||||| ||||| |||| | || ||     
T  25292654 gctcgatgatatccttgatgagtgattgatcaaatctagtcgacttagaggctcatcctctttcaaaccaaagaacatcatgtttcaccattacattggc 25292753  T
Q  101 aacaggttgaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatc 200  Q
    |||| ||||||||||||||||||||| || ||||||||||||| || |||||||||||||  ||| |    |||||||||| ||||||||| | ||  |     
T  25292754 aacaagttgaaagagattacaaggagattggatgatattgctgcaactaagaacaagtttcttcttcgacagggtggaactgttagggaaagctcaactg 25292853  T
Q  201 aagtagctgaagggcgccaaa 221  Q
    |||||||||||  ||||||||    
T  25292854 aagtagctgaatagcgccaaa 25292874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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