View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0884_low_5 (Length: 383)
Name: NF0884_low_5
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0884_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 35734676 - 35735038
Alignment:
| Q |
11 |
aatgagatggacatcatcacacacaagaatgtcagggccatcctgcattgacatgtaaacaaccttaaaaaatgcaataacaaatgacacaaattagaat |
110 |
Q |
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| T |
35734676 |
aatgatatgggcttcatcacacacaagaatgtcagggccatcctgcattgacatgtaaacaaccttaaaaaatgcaataacaaatgacacaaattagaat |
35734775 |
T |
|
| Q |
111 |
acaagttttaggagtcttgatgaagtcaatattctacttctgagtttccaaaatatgcaacgaaaaagttagaagtctgtgtttccagttagttttcggt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35734776 |
acaagttttaggagtcttgatgaagtcaatattctacttctgagtttccaaaatatgcaacgaaaaagttagaagtctgtgtttccagttagttttcggt |
35734875 |
T |
|
| Q |
211 |
ggctatctcactttaagtgtgcttgtctctccgccattggttaccatataaacttgccttttccatgtctaattggcagtccaatcccaccattgaaacc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35734876 |
ggctatctcactttaagtgtgcttgtctctccgccattggttaccatataaacttgccttttccatgtctaattggcagtccaatcccaccattgaaacc |
35734975 |
T |
|
| Q |
311 |
aaaatgaaagatctgtaggactttcaaatttcaaattattaggatattcacaccctacctatg |
373 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35734976 |
aaaatgaaagatctgaaggactttcaaatttcaaattattaggatattcacaccctacctatg |
35735038 |
T |
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