View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0884_low_6 (Length: 367)
Name: NF0884_low_6
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0884_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 20632988 - 20633335
Alignment:
| Q |
1 |
atcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20632988 |
atcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacattt |
20633087 |
T |
|
| Q |
101 |
agagaaacactaaagttatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20633088 |
agagaaacactaaagttatgcagaagagtgaagttaccggcagtgacagataagaaagcttttgagatgttgaagtccaaataagaaaaagggtagaaat |
20633187 |
T |
|
| Q |
201 |
gaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633188 |
gaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattc |
20633287 |
T |
|
| Q |
301 |
aagatttgaagaaagtgcttttgctgttaaggacttgttgatgatgtc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20633288 |
aagatttgaagaaagtgcttttgctgttaaggacttattgatgatgtc |
20633335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 20649087 - 20649428
Alignment:
| Q |
1 |
atcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
20649087 |
atcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacattt |
20649186 |
T |
|
| Q |
101 |
agagaaacactaaagttatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||||| |
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| T |
20649187 |
agagaaacactaaagttatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatattgaaattcaaataagaaaaagggtagaaat |
20649286 |
T |
|
| Q |
201 |
gaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20649287 |
gaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattg |
20649386 |
T |
|
| Q |
301 |
aagatttgaagaaagtgcttttgctgttaaggacttgttgatgat |
345 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
20649387 |
aagatttgaag---gtgcttttgctgttaaggacttgttgatgat |
20649428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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