View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0884_low_7 (Length: 367)
Name: NF0884_low_7
Description: NF0884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0884_low_7 |
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| [»] scaffold1176 (2 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 37257357 - 37257067
Alignment:
| Q |
3 |
catctccaacaatatcacccgttgccactccacccaaatcctctcaggcaccatctccttcagctgtctcaccggtggcatctcctcccatacctgtgaa |
102 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
37257357 |
catctccaaccatatcacccgttgccactccacccaaatcctctcaggcaccatctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaa |
37257258 |
T |
|
| Q |
103 |
gaacgctccttctccttcc------------tctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcacct |
190 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37257257 |
gaacgctccttctccttcccctcctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcacct |
37257158 |
T |
|
| Q |
191 |
tcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
37257157 |
tcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgt |
37257067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 37237751 - 37237611
Alignment:
| Q |
141 |
ctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctgg |
240 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||| || |||||||||||| |||| | |
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| T |
37237751 |
ctcctgctgttactccatcatccatctctactcctccttctgaagcaccttcaccttctgataactccatcgccgcattgaacagattcacctttgccgt |
37237652 |
T |
|
| Q |
241 |
atctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
|||||| |||| | | ||||| ||||| ||||||||||||| |
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| T |
37237651 |
atctgctgctgctgttgtttttgctgcagctttgatgatgt |
37237611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 37244954 - 37244886
Alignment:
| Q |
211 |
cgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgat |
279 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||| |||||| ||||||||||||||| ||||||||| |
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| T |
37244954 |
cgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgat |
37244886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 37232824 - 37232696
Alignment:
| Q |
141 |
ctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctgg |
240 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||| |||||||||| ||| || || ||||||||| || |||||||||||||| || |
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| T |
37232824 |
ctcctgctgttactccatcatcgatctccactcctcctgctgaagcaccatca---------aa---cggcgccgctttgaatagattcaccgttgccgg |
37232737 |
T |
|
| Q |
241 |
atctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
|||||| |||||| || |||||||||| ||||||||||||| |
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| T |
37232736 |
atctgctgctgttgtgattttcgctgccgctttgatgatgt |
37232696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 37253106 - 37253022
Alignment:
| Q |
108 |
ctccttctccttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcaccttc |
192 |
Q |
| |
|
||||| || |||| || |||||||||||||| ||||||||| |||||||||||||||| || ||| ||||||| |||| |||||| |
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| T |
37253106 |
ctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccatttccactcctccttccgaaggaccttc |
37253022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 37253200 - 37253136
Alignment:
| Q |
56 |
tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaagaacgctccttctccttc |
120 |
Q |
| |
|
||||| || |||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37253200 |
tctccctccgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttc |
37253136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 37237860 - 37237812
Alignment:
| Q |
56 |
tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaaga |
104 |
Q |
| |
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||||| || |||| |||||||||||||||||||||| |||||||||||| |
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| T |
37237860 |
tctccctccgctgactcaccggtggcatctcctcccgtacctgtgaaga |
37237812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 14254033 - 14253963
Alignment:
| Q |
211 |
cgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
14254033 |
cgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgt |
14253963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 14316761 - 14316691
Alignment:
| Q |
211 |
cgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
||||||||| |||||||| ||| |||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
14316761 |
cgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgt |
14316691 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 14248227 - 14248153
Alignment:
| Q |
207 |
ccgccgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||| | ||||| ||||||| | ||||||||||||||||| |
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|
| T |
14248227 |
ccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgt |
14248153 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 14351723 - 14351662
Alignment:
| Q |
128 |
tctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcacc |
189 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| | || ||| ||||||| |
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|
| T |
14351723 |
tctcccgctgtcgctcctgctgttactccatcatcagtctctactccaccatctcaagcacc |
14351662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 303 - 441
Alignment:
| Q |
143 |
cctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggat |
242 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||| ||| ||||||| ||| | || ||| |||||||||||| |||||||| || ||||| |||| |
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|
| T |
303 |
cctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgctttgaacagatttacagttgccggat |
402 |
T |
|
| Q |
243 |
ctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
|| | ||||| |||||||| ||||||||||||||||| |
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|
| T |
403 |
ctactgctgtcgtggttttcattgctgctttgatgatgt |
441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 124 - 172
Alignment:
| Q |
141 |
ctcctgctgttactccatcatccatctctactactccttctgaagcacc |
189 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||| ||| ||||||| |
|
|
| T |
124 |
ctcctgctgtgactccatcatcgatctctactcctccatctcaagcacc |
172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 595 - 660
Alignment:
| Q |
216 |
cttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
|||| |||||||| || ||||| |||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
595 |
ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt |
660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 3277 - 3209
Alignment:
| Q |
213 |
ccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgt |
281 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||| ||||| |||||||| | |||||||||||||||| |
|
|
| T |
3277 |
ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgt |
3209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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