View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0885_high_12 (Length: 286)
Name: NF0885_high_12
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4953764 - 4954028
Alignment:
| Q |
1 |
taccaaaacaatcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaata |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4953764 |
taccgaaacaatcaattaaactaccagataacataaaacatgtcaaaatcaattcaaacaagcacacagtcttaaccatcactgaatcaactttaaaata |
4953863 |
T |
|
| Q |
101 |
caactcgaaatatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4953864 |
caactcgaaatatgagctgtcagatctttatggaattgcgtgattacagataatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
4953963 |
T |
|
| Q |
201 |
ttgggaagtttaagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
265 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4953964 |
ttggggagtttgagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4954028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4938055 - 4938319
Alignment:
| Q |
1 |
taccaaaacaatcaattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaata |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4938055 |
taccgaaacaatcaattaaactaccagataacataaaacatgtcaaaatcaattcaaataagcacgcagtcttaaccatcactgaatcaactttaaaata |
4938154 |
T |
|
| Q |
101 |
caactcgaaatatgagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggt |
200 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4938155 |
caactcgaaatatgagccgtcggatctttatggaattgcgtcattacagagaatctaatataaaagacaaggtagatacctttcaagatatttgaatggt |
4938254 |
T |
|
| Q |
201 |
ttgggaagtttaagatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
265 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4938255 |
ttggggagtttgagatgatatggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4938319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 353 times since January 2019
Visitors: 6714