View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0885_high_14 (Length: 283)
Name: NF0885_high_14
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_high_14 |
 | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 38518163 - 38518418
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38518163 |
acatcaacagacccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
38518262 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38518263 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
38518362 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38518363 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
38518418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 44553301 - 44553556
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44553301 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
44553400 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44553401 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
44553500 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44553501 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
44553556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 34945789 - 34945534
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945789 |
acatcaacagacccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
34945690 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34945689 |
catcatgagggtgcaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgttgtagaaaccactcata |
34945590 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34945589 |
aacaacattctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
34945534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 27644504 - 27644654
Alignment:
| Q |
126 |
tgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaa |
225 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27644504 |
tgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtaatattcacacgttcttgatgctgtagaaaccactcataaacaa |
27644603 |
T |
|
| Q |
226 |
ccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27644604 |
ccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
27644654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 20394982 - 20394847
Alignment:
| Q |
141 |
ttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcag |
240 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20394982 |
ttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcag |
20394883 |
T |
|
| Q |
241 |
gatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20394882 |
gatattttgctggtttgtgtcttttgatctccgctc |
20394847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 23717240 - 23717495
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23717240 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
23717339 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23717340 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
23717439 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23717440 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
23717495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 32742219 - 32742474
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32742219 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
32742318 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32742319 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
32742418 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32742419 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
32742474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 35216631 - 35216376
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35216631 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
35216532 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35216531 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
35216432 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35216431 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
35216376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 38223387 - 38223132
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223387 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
38223288 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223287 |
catcatgagggtacaagagtttcgttgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
38223188 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38223187 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
38223132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 9313562 - 9313817
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9313562 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcagtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
9313661 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9313662 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctatgatattcacacgttcttgatgctgtagaaaccactcata |
9313761 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9313762 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
9313817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 42989167 - 42988912
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42989167 |
acatcaacagactcactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
42989068 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42989067 |
catcatgagggtacagaagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
42988968 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42988967 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
42988912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 3522887 - 3522632
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522887 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
3522788 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522787 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
3522688 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3522687 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
3522632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 10269208 - 10269463
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10269208 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
10269307 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10269308 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
10269407 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10269408 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
10269463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 33 - 276
Target Start/End: Complemental strand, 335764 - 335521
Alignment:
| Q |
33 |
ccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335764 |
ccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
335665 |
T |
|
| Q |
133 |
acaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335664 |
acaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
335565 |
T |
|
| Q |
233 |
catgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
335564 |
catgtcaggatattttgctggtttgtgtcttttgatctccgctc |
335521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 14219188 - 14218933
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14219188 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
14219089 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14219088 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
14218989 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14218988 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
14218933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 30704105 - 30704360
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30704105 |
acatcaacagacccactctcgccaaaacgatgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcatgtagagaagttaaaatctgaat |
30704204 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30704205 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
30704304 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
30704305 |
aacaaccttctccatgtcaggatattttgttggtttgtgtcttttgatctccgctc |
30704360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 14677355 - 14677100
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677355 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
14677256 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677255 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
14677156 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14677155 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
14677100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 45107114 - 45106859
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107114 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
45107015 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107014 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
45106915 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45106914 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
45106859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 1085593 - 1085848
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085593 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
1085692 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085693 |
catcatgagggtacaagagtttcattgtatctcttgccttctacaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
1085792 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1085793 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
1085848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 33 - 276
Target Start/End: Complemental strand, 21395910 - 21395667
Alignment:
| Q |
33 |
ccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21395910 |
ccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
21395811 |
T |
|
| Q |
133 |
acaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21395810 |
acaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
21395711 |
T |
|
| Q |
233 |
catgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21395710 |
catgtcaggatattttgctggtttgtgtcttttgatctccgctc |
21395667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 10485669 - 10485414
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10485669 |
acatcaacagacccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagtcatcctgtagagaagttaaaatctgaat |
10485570 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10485569 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtaaaaaccactcata |
10485470 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10485469 |
aacaaccttctccacgtcaggatattttgctggtttgtgtcttttgatctccgctc |
10485414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 17195378 - 17195633
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17195378 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtacagaagttaaaatctgaat |
17195477 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17195478 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
17195577 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
17195578 |
aacaaccttctccatatcaggatattttgcttgtttgtgtcttttgatctccgctc |
17195633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 49550107 - 49550350
Alignment:
| Q |
33 |
ccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
132 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49550107 |
ccactctcgccaaaaggatgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
49550206 |
T |
|
| Q |
133 |
acaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49550207 |
acaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
49550306 |
T |
|
| Q |
233 |
catgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
49550307 |
catgtcaggatattttattggtttgtgtcttttgatctccgctc |
49550350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 5926647 - 5926518
Alignment:
| Q |
147 |
gtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcaggatatt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5926647 |
gtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcaggatatt |
5926548 |
T |
|
| Q |
247 |
ttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
5926547 |
ttgctggtttgtgtcttttgatctccgctc |
5926518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 147 - 276
Target Start/End: Original strand, 27182475 - 27182604
Alignment:
| Q |
147 |
gtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcaggatatt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27182475 |
gtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcaggatatt |
27182574 |
T |
|
| Q |
247 |
ttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
27182575 |
ttgctggtttgtgtcttttgatctccgctc |
27182604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 16641825 - 16642080
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16641825 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
16641924 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16641925 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
16642024 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16642025 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
16642080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 41774128 - 41773873
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41774128 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
41774029 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41774028 |
catcatgagggtacaagagtttcattgtatctcttgccttctacaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
41773929 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41773928 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
41773873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 2026895 - 2026640
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2026895 |
acatcaacagacccactctcgacaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
2026796 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2026795 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
2026696 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2026695 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
2026640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 37038760 - 37039015
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37038760 |
acatcaacagacccactctcgtcaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
37038859 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37038860 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
37038959 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37038960 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
37039015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 43488288 - 43488033
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488288 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
43488189 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488188 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
43488089 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43488088 |
aacaactttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
43488033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 23415881 - 23415626
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415881 |
acatcaacagacccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
23415782 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415781 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgaaattcacacgttcttgatgctgtagaaaccactcata |
23415682 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
23415681 |
aacaaccttctccatgtcaggatattttactggtttgtgtcttttgatctccgctc |
23415626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 3615504 - 3615249
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3615504 |
acatcaacagacccactctcgtcaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
3615405 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3615404 |
catcatgagggtataagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgttgtagaaaccactcata |
3615305 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3615304 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
3615249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 33 - 276
Target Start/End: Complemental strand, 2272788 - 2272545
Alignment:
| Q |
33 |
ccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272788 |
ccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
2272689 |
T |
|
| Q |
133 |
acaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272688 |
acaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
2272589 |
T |
|
| Q |
233 |
catgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2272588 |
catgtcaggatattttgctggtttgtgtcttttgatctccgctc |
2272545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 3535114 - 3534859
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3535114 |
acatcaacagacccactctcgccaaaacgacgaaataactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
3535015 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3535014 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
3534915 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3534914 |
aacaaccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctc |
3534859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 12533175 - 12532919
Alignment:
| Q |
21 |
acatcatcagaaccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
120 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12533175 |
acatcaacagacccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaat |
12533076 |
T |
|
| Q |
121 |
catcatgagggtacaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcata |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12533075 |
catcatgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcata |
12532976 |
T |
|
| Q |
221 |
aacaaccttctccatgtcaggatattttgctgg-tttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
12532975 |
aacaacattctccttgtcaggatattttgctggttttgtgtcttttgatctccgctc |
12532919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 7356529 - 7356769
Alignment:
| Q |
33 |
ccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7356529 |
ccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatt-cccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
7356627 |
T |
|
| Q |
133 |
acaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7356628 |
acaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactc--aaacaaccttctc |
7356725 |
T |
|
| Q |
233 |
catgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7356726 |
catgtcaggatattttgctggtttgtgtcttttgatctccgctc |
7356769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 39082 - 39325
Alignment:
| Q |
33 |
ccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggt |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082 |
ccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcatgtagagaagttaaaatctgaatcatcatgagggt |
39181 |
T |
|
| Q |
133 |
acaagagtttcatggtatctcttgccttctgcaaaattaattcttctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39182 |
acaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctc |
39281 |
T |
|
| Q |
233 |
catgtcaggatattttgctggtttgtgtcttttgatctctgctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39282 |
catgtcaggatattttgctggtttgtgtcttttgatctccgctc |
39325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 658 times since January 2019
Visitors: 6718