View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_high_2 (Length: 490)
Name: NF0885_high_2
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 27283360 - 27283170
Alignment:
| Q |
20 |
ctgcagtcatcaaaacatttgccttcacattagttaatcttttctctttctctatttcttcaatagcaaaacctgtataccacataaatgcataaagaac |
119 |
Q |
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| T |
27283360 |
ctgcagtcatcaaaacacttgccttcacattagttaaccttttatctttctctatttcttcaatagcaaaacctgtataccacataaatgcataaagaac |
27283261 |
T |
|
| Q |
120 |
gaagcttgtttatgaagataaatgctatgacnnnnnnnttattgggtaaccatcatatctagaaaacatatttgatgagatgagctagtaa |
210 |
Q |
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| T |
27283260 |
gaagcttgtttatgaagataaatgctatgacaaaaaaattattgggtaaccatcatatctagaaaacatatttgaatagatgagctagtaa |
27283170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 226 - 429
Target Start/End: Complemental strand, 27283053 - 27282851
Alignment:
| Q |
226 |
tttgaccattgttgattaaccaaatggagtgttgagtcatttcctctatgtgtaatttgatgccatgccatatgtaagattgactataataactagaaat |
325 |
Q |
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| T |
27283053 |
tttgatcattgttgattaaccagatggagttttgagtcatttcctctatttgtaatttgatgccatgccatatgtaagattgactataataactagaaat |
27282954 |
T |
|
| Q |
326 |
tgtcgttgatattctatcaaataaaaatttacattnnnnnnnnnnnnnnnnnnggtgttgtcatatggttaaaatcttacacaaactactacgttgttga |
425 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27282953 |
tgtcgttgatattctatcaaataaaaatttacagt-aaaagaaaaaaagaaaaggtgttgtcatatggttaaaatcttacacaaactacgacgttgttga |
27282855 |
T |
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| Q |
426 |
aaat |
429 |
Q |
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|||| |
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| T |
27282854 |
aaat |
27282851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 39447106 - 39447244
Alignment:
| Q |
76 |
tcttcaatagcaaaacctgtataccacataaatgcataaagaacgaagcttgtttatgaagataaatgctatgacnnnnnnn--ttattgggtaaccatc |
173 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
39447106 |
tcttcaatagcaaaacctgtataccgcataaatgcataaagaca----cttgtttatgaagataaatgctatgaaaaaaaataattattggttaaccatc |
39447201 |
T |
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| Q |
174 |
atatctagaaaacatatttgatgagatgagctagtaagtataa |
216 |
Q |
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| T |
39447202 |
acatctagaaaacatatttgaagagaggagctagtaagtataa |
39447244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 11751520 - 11751584
Alignment:
| Q |
39 |
tgccttcacattagttaatcttttctctttctctatttcttcaatagcaaaacctgtataccaca |
103 |
Q |
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| T |
11751520 |
tgccttcacattagataaccttttctctttccctatttctgcaagagcaatatctgtagaccaca |
11751584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 38211046 - 38211105
Alignment:
| Q |
39 |
tgccttcacattagttaatcttttctctttctctatttcttcaatagcaaaacctgtata |
98 |
Q |
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||||||||||| | ||| ||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
38211046 |
tgccttcacatcaaataaccttttctctgtctctatttctccaataacaaaacctgtata |
38211105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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