View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0885_high_4 (Length: 390)
Name: NF0885_high_4
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_high_4 |
 | |
|
| [»] scaffold0697 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 13340688 - 13341043
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340688 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
13340787 |
T |
|
| Q |
125 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340788 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
13340887 |
T |
|
| Q |
225 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340888 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
13340987 |
T |
|
| Q |
325 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340988 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
13341043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 13330030 - 13330128
Alignment:
| Q |
282 |
ctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13330030 |
ctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
13330128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 5670221 - 5670576
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670221 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
5670320 |
T |
|
| Q |
125 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670321 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
5670420 |
T |
|
| Q |
225 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
324 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670421 |
tgtaaatctggcgagcatatacctaacatatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
5670520 |
T |
|
| Q |
325 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670521 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
5670576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 25 - 380
Target Start/End: Complemental strand, 10639519 - 10639164
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||| |||||||| ||| ||||||| |
|
|
| T |
10639519 |
catcacataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacatattttatttttatattaatttatactattgt |
10639420 |
T |
|
| Q |
125 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639419 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
10639320 |
T |
|
| Q |
225 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
324 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10639319 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
10639220 |
T |
|
| Q |
325 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639219 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
10639164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 32716092 - 32716447
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| | ||||||||| |||||||| ||| ||||||| |
|
|
| T |
32716092 |
catcacataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgt |
32716191 |
T |
|
| Q |
125 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
32716192 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggtaaaacataaatgaat |
32716291 |
T |
|
| Q |
225 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
324 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32716292 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
32716391 |
T |
|
| Q |
325 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32716392 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
32716447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 25 - 380
Target Start/End: Complemental strand, 26663320 - 26662965
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||| |||||||| ||| ||||||| |
|
|
| T |
26663320 |
catcacataaataataataccctatcataaataaacctgaagttaaaatccataaactatgcaagacatattttatttttatattaatttatactattgt |
26663221 |
T |
|
| Q |
125 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663220 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
26663121 |
T |
|
| Q |
225 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
324 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26663120 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccagcacattgaccttgatgt |
26663021 |
T |
|
| Q |
325 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663020 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
26662965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 25 - 380
Target Start/End: Complemental strand, 22903579 - 22903224
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| | ||||||||| |||||||| ||| ||||||| |
|
|
| T |
22903579 |
catcacataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgt |
22903480 |
T |
|
| Q |
125 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903479 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
22903380 |
T |
|
| Q |
225 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
324 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22903379 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
22903280 |
T |
|
| Q |
325 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903279 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
22903224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 25 - 352
Target Start/End: Complemental strand, 34149379 - 34149051
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaatc-tataaactatgcaagacatgttttattttaatattaatctatgctat-t |
122 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | | ||| || |||||| |||| |||||||||| ||| |||| || ||| |||| | | | |
|
|
| T |
34149379 |
catcacataaataataataccctatcacaaataaaattaaaattattttcctataaa-tatgtaagacatgttctatattaacatgaatttatgttgtgt |
34149281 |
T |
|
| Q |
123 |
gtaccttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatga |
222 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||||| || ||||| |||||||| |||||||| | |
|
|
| T |
34149280 |
ataccttgaggaacccttaacccatttgttcgagaaatagcatttctgaggactctagaatcagcagctgaaccttcccacccaggcaacacatatataa |
34149181 |
T |
|
| Q |
223 |
attgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgat |
322 |
Q |
| |
|
|||| | |||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
34149180 |
attgcatatctggtgagcatacacccaacacgtttgttgctatctcacccttccttgttctgaatctagttttgtcagcttcgggcacattgaccttgat |
34149081 |
T |
|
| Q |
323 |
gtaggtgccatcaagagctcctaaacaatt |
352 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
34149080 |
gtaagtgccatcaagagctcctaaacaatt |
34149051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 237 - 380
Target Start/End: Original strand, 5537 - 5680
Alignment:
| Q |
237 |
gagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
5537 |
gagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttctggcacaatgaccttgatgtaagtgccatcaa |
5636 |
T |
|
| Q |
337 |
gagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5637 |
gagctcctaaacaatttttaaagtatttccatcgttcgtctgtg |
5680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 5372 - 5529
Alignment:
| Q |
25 |
catcacataaataataataccctatcataaataaaacaatagttaaaa-tctataaactatgcaagacatgttttattttaatattaatctatgctattg |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||||| || |||||||||||||||||| ||||||||| |||||||| ||| |||||| |
|
|
| T |
5372 |
catcacataaataataataccctgtcataaataaacctgaagttaaaaatccataaactatgcaagacatattttatttttatattaatttatactattg |
5471 |
T |
|
| Q |
124 |
taccttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctaga |
181 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5472 |
tatcttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctaga |
5529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 48943430 - 48943486
Alignment:
| Q |
296 |
gtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatt |
352 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48943430 |
gtcagcttcgggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatt |
48943486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 899 times since January 2019
Visitors: 6705