View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_high_5 (Length: 376)
Name: NF0885_high_5
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 31599542 - 31599401
Alignment:
| Q |
76 |
cacaatgtagcacaggaaaaacaagcaacatcgattgtcctttctttttcacaaacaatcaaatgtagaaggtgttatgagagttcatttgttaggagaa |
175 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31599542 |
cacaatgtagcacaggaaaaacaagcaacatcgattctcctttctttttcacaaacaatcaaatgtagaaggtgttatgagagttcatttgttaggagaa |
31599443 |
T |
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| Q |
176 |
gctgctaaagttgataaaacaccacatagagcatgtgaaaag |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31599442 |
gctgcaaaagttgataaaacaccacatagagcatgtgaaaag |
31599401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 243 - 354
Target Start/End: Complemental strand, 31599407 - 31599296
Alignment:
| Q |
243 |
tgaaaagcaaagagagcttgatgatgaatatgtgagcacttttagacttaaagccgtgaacaatggagattctataagttattcagaaaaagaagttcat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31599407 |
tgaaaagcaaagagagcttgatgatgaatatgtgagcacttttagacttaaagccgtgaacaatggagattctataagttattcagaaaaagaagttcat |
31599308 |
T |
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| Q |
343 |
actagtgatgat |
354 |
Q |
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|||||||||||| |
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| T |
31599307 |
actagtgatgat |
31599296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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