View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0885_low_10 (Length: 406)
Name: NF0885_low_10
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 47 - 406
Target Start/End: Complemental strand, 708878 - 708519
Alignment:
| Q |
47 |
catcaacaccatttccattatcatctttaccaacaccagaaacaccaccgccatttccaaatacacctacaccaccccattgctgacctaaaccaacagc |
146 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
708878 |
catcaacaccatttccatgatcatctttaccaacaccagaaacaccaccaccatttccaaatacacctacaccaccccattgctgacctaaaccaacagc |
708779 |
T |
|
| Q |
147 |
cctattcctatcctcaacaaacccaccaacaaattcaactccatcacccaaaaactgacctaaattcccactggcttgctcaaacctcccaccttgttga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
708778 |
cctattcctatcctcaacaaacccaccaacaaattcaactccatcacccaaaaactgacctaaattcccactggcttgctcaaacctcccaccttgttga |
708679 |
T |
|
| Q |
247 |
ccatccccttgttgccaaagattaaacctttcacggccaataccagcattaacaccaccattcacttcaacatcaccaaaaaccccttcaaatccctcaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
708678 |
ccatccccttgttgccaaagattaaacctttcacggccaataccagcattaacaccaccattcacttcaacatcaccaaaaacccctccaaatccctcaa |
708579 |
T |
|
| Q |
347 |
caacaccatgatcatcaccaccaaacaaccctttacctccattatcatgatcatcaacaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
708578 |
caacaccatgatcatcaccaccaaacaaccctttacctccattatcatgatcatcaacaa |
708519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1334 times since January 2019
Visitors: 6712