View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_14 (Length: 381)
Name: NF0885_low_14
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 379
Target Start/End: Original strand, 17995647 - 17996003
Alignment:
| Q |
23 |
catcatcagattggcacccttcctctaacccaaacatgtcaccctcacgtgaacaaatggaggagacctcctcacactccacctctctccgatctggtgg |
122 |
Q |
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| T |
17995647 |
catcatcagattggcacccttcctctaacccaaacatgacaccctctcgtgaaaaaacggagaagacctcctcacactccacctctctccgatctggtgg |
17995746 |
T |
|
| Q |
123 |
ccaccgtcgtccaccacctacgtccaccacccacaaacaaaaatccataaccacaaccttcagattcaggtgctcatcaatcaccgctctcctcttaaaa |
222 |
Q |
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|||||| |||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
17995747 |
ccaccgccgtccaccacctacctccaccacccataaacaaaaatccatacccataaccttcagattcaggtgctcatcaatcacccctctcctcttagaa |
17995846 |
T |
|
| Q |
223 |
gaaacttggatcatggttacatccatcctctttctcccaatggtgtaatcatcaaaatctaagaataccccaaacgaagagccaatcttcttgaacaagg |
322 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |
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| T |
17995847 |
gaaacttggatcatggctacatccaacctctttctcccaattgtgtaatcatcaaaatctaagaacaccccaaacaaagagtcaatcttcttgaacaagg |
17995946 |
T |
|
| Q |
323 |
gttcatcccaaacatggaggggaataccatgaacatggagccaaaccgccctactat |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17995947 |
gttcatcccaaacatggaggggaataccatgaacatggagccaaaccgccatactat |
17996003 |
T |
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