View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0885_low_16 (Length: 373)

Name: NF0885_low_16
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0885_low_16
NF0885_low_16
[»] chr1 (23 HSPs)
chr1 (19-365)||(2445770-2446116)
chr1 (220-273)||(3921659-3921712)
chr1 (207-273)||(19637760-19637826)
chr1 (213-255)||(30847727-30847769)
chr1 (144-276)||(20157285-20157420)
chr1 (156-276)||(22794031-22794148)
chr1 (144-234)||(16812587-16812674)
chr1 (212-255)||(373057-373100)
chr1 (213-264)||(25361887-25361938)
chr1 (214-276)||(6427339-6427401)
chr1 (213-255)||(40747780-40747822)
chr1 (144-193)||(1815326-1815375)
chr1 (222-255)||(11571595-11571628)
chr1 (212-253)||(14332420-14332461)
chr1 (207-276)||(40285655-40285724)
chr1 (212-264)||(609464-609516)
chr1 (223-267)||(10799668-10799712)
chr1 (212-264)||(11412774-11412826)
chr1 (207-255)||(31667435-31667483)
chr1 (213-273)||(39828263-39828323)
chr1 (230-266)||(42325559-42325595)
chr1 (207-255)||(44296496-44296543)
chr1 (207-255)||(44482240-44482288)
[»] chr6 (26 HSPs)
chr6 (213-273)||(9024183-9024243)
chr6 (212-254)||(10157995-10158037)
chr6 (214-267)||(4864061-4864114)
chr6 (214-255)||(6284669-6284710)
chr6 (204-264)||(4859111-4859171)
chr6 (207-255)||(9617444-9617492)
chr6 (207-255)||(9629393-9629441)
chr6 (156-247)||(12236676-12236765)
chr6 (207-323)||(13851678-13851794)
chr6 (212-255)||(12086351-12086394)
chr6 (212-255)||(30866150-30866193)
chr6 (212-255)||(34446575-34446618)
chr6 (207-253)||(7377991-7378037)
chr6 (207-253)||(8931603-8931649)
chr6 (212-254)||(10335382-10335424)
chr6 (218-276)||(15443684-15443742)
chr6 (207-253)||(26562701-26562747)
chr6 (210-264)||(31115486-31115540)
chr6 (207-276)||(7265594-7265663)
chr6 (213-278)||(13595896-13595961)
chr6 (207-244)||(32980979-32981016)
chr6 (207-251)||(6751883-6751927)
chr6 (207-255)||(8148130-8148178)
chr6 (207-255)||(9025495-9025543)
chr6 (207-255)||(9195755-9195803)
chr6 (207-251)||(19369831-19369875)
[»] chr4 (29 HSPs)
chr4 (212-264)||(14465300-14465352)
chr4 (144-264)||(18513176-18513299)
chr4 (208-255)||(11110213-11110260)
chr4 (206-276)||(33950125-33950195)
chr4 (214-274)||(2796537-2796597)
chr4 (207-255)||(40699932-40699980)
chr4 (207-254)||(3568851-3568898)
chr4 (207-255)||(5654590-5654640)
chr4 (212-262)||(25390892-25390942)
chr4 (223-265)||(26276026-26276068)
chr4 (219-255)||(10546158-10546194)
chr4 (214-254)||(50875210-50875250)
chr4 (212-255)||(43300626-43300669)
chr4 (206-273)||(56049869-56049935)
chr4 (206-272)||(21345533-21345599)
chr4 (213-255)||(31243555-31243597)
chr4 (214-276)||(36635313-36635375)
chr4 (212-253)||(683064-683105)
chr4 (206-267)||(7214522-7214583)
chr4 (214-255)||(20743286-20743327)
chr4 (218-255)||(34200283-34200320)
chr4 (220-253)||(34589720-34589753)
chr4 (212-249)||(40224504-40224541)
chr4 (218-255)||(43299983-43300020)
chr4 (214-255)||(46180944-46180985)
chr4 (214-267)||(55941011-55941064)
chr4 (207-255)||(5225614-5225662)
chr4 (212-276)||(8820397-8820461)
chr4 (208-264)||(19262926-19262982)
[»] chr2 (16 HSPs)
chr2 (213-267)||(18570970-18571024)
chr2 (213-266)||(16630794-16630847)
chr2 (208-264)||(4229410-4229466)
chr2 (212-279)||(44605145-44605212)
chr2 (212-266)||(42205841-42205895)
chr2 (207-253)||(45000847-45000893)
chr2 (212-264)||(10535765-10535817)
chr2 (207-255)||(31026705-31026753)
chr2 (214-255)||(19613621-19613662)
chr2 (223-264)||(40681983-40682024)
chr2 (207-276)||(43586006-43586075)
chr2 (212-276)||(14268739-14268803)
chr2 (207-255)||(18889592-18889640)
chr2 (207-255)||(29970550-29970598)
chr2 (213-245)||(37402091-37402123)
chr2 (207-255)||(37411245-37411293)
[»] chr7 (21 HSPs)
chr7 (212-264)||(38134412-38134464)
chr7 (213-267)||(17285062-17285116)
chr7 (207-264)||(2525845-2525902)
chr7 (213-264)||(4909152-4909203)
chr7 (210-255)||(19930945-19930990)
chr7 (214-255)||(36314635-36314676)
chr7 (214-255)||(44172898-44172939)
chr7 (144-258)||(7133213-7133330)
chr7 (214-264)||(30013196-30013246)
chr7 (206-251)||(18678162-18678207)
chr7 (214-255)||(21247744-21247785)
chr7 (213-254)||(37775993-37776034)
chr7 (215-251)||(2143862-2143898)
chr7 (207-255)||(19206060-19206108)
chr7 (212-264)||(23128667-23128719)
chr7 (214-254)||(23930230-23930270)
chr7 (207-255)||(24146826-24146874)
chr7 (204-255)||(36013796-36013848)
chr7 (207-255)||(37824673-37824721)
chr7 (221-253)||(48581996-48582028)
chr7 (221-249)||(48964077-48964105)
[»] chr8 (20 HSPs)
chr8 (204-255)||(29198477-29198528)
chr8 (228-276)||(14227211-14227259)
chr8 (216-264)||(37225753-37225801)
chr8 (214-255)||(3508062-3508103)
chr8 (207-264)||(12985393-12985450)
chr8 (219-264)||(40063952-40063997)
chr8 (223-259)||(10441209-10441245)
chr8 (216-264)||(34201056-34201104)
chr8 (207-255)||(34897095-34897143)
chr8 (212-255)||(31236583-31236626)
chr8 (220-258)||(7616863-7616901)
chr8 (213-255)||(8798838-8798880)
chr8 (167-264)||(18646173-18646268)
chr8 (206-252)||(31548293-31548339)
chr8 (214-255)||(9936824-9936865)
chr8 (206-255)||(12606829-12606878)
chr8 (206-251)||(31119101-31119146)
chr8 (232-272)||(2648274-2648314)
chr8 (214-254)||(3112362-3112402)
chr8 (207-255)||(16987922-16987970)
[»] chr5 (27 HSPs)
chr5 (207-276)||(32444755-32444824)
chr5 (213-274)||(43208281-43208342)
chr5 (214-264)||(28296329-28296379)
chr5 (207-264)||(16199286-16199343)
chr5 (208-257)||(28771685-28771734)
chr5 (204-264)||(9489747-9489807)
chr5 (212-264)||(38806854-38806906)
chr5 (206-249)||(10009842-10009885)
chr5 (220-255)||(11596469-11596504)
chr5 (212-255)||(18607103-18607146)
chr5 (212-255)||(19737488-19737531)
chr5 (213-264)||(23287356-23287407)
chr5 (212-255)||(31264448-31264491)
chr5 (212-255)||(37472603-37472646)
chr5 (214-264)||(38749571-38749621)
chr5 (206-264)||(39424642-39424700)
chr5 (216-273)||(16881128-16881185)
chr5 (207-252)||(41091258-41091303)
chr5 (216-264)||(2577190-2577238)
chr5 (228-264)||(9449470-9449506)
chr5 (212-280)||(10010539-10010607)
chr5 (207-255)||(17925173-17925221)
chr5 (223-267)||(18919039-18919083)
chr5 (207-255)||(22423813-22423861)
chr5 (207-255)||(40211966-40212014)
chr5 (213-253)||(41558661-41558701)
chr5 (215-255)||(41600908-41600948)
[»] chr3 (23 HSPs)
chr3 (206-255)||(20691329-20691378)
chr3 (207-255)||(40150572-40150620)
chr3 (145-255)||(24204983-24205090)
chr3 (212-273)||(41319316-41319377)
chr3 (207-255)||(9210826-9210874)
chr3 (214-254)||(19323456-19323496)
chr3 (207-255)||(40697859-40697907)
chr3 (212-255)||(12704663-12704706)
chr3 (206-253)||(13807181-13807228)
chr3 (212-255)||(52369785-52369828)
chr3 (212-258)||(8039213-8039259)
chr3 (212-254)||(20141107-20141149)
chr3 (212-254)||(23272000-23272042)
chr3 (212-254)||(27097065-27097107)
chr3 (144-245)||(40993276-40993374)
chr3 (213-254)||(25908846-25908887)
chr3 (207-255)||(27513663-27513712)
chr3 (216-273)||(34409352-34409409)
chr3 (207-255)||(16192751-16192799)
chr3 (207-267)||(35160718-35160778)
chr3 (223-263)||(40017386-40017426)
chr3 (207-251)||(44427855-44427899)
chr3 (212-256)||(51512189-51512233)
[»] scaffold0011 (1 HSPs)
scaffold0011 (206-255)||(240021-240070)
[»] scaffold0022 (1 HSPs)
scaffold0022 (206-276)||(90832-90902)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 2446116 - 2445770
Alignment:
Q  19 caagctctttctgtatatcaatagtaaaacaggattacaagaaaaggatgtgatgtattaagtttttgtctttactatttgagcatctcgcattgaggtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2446116 caagctctttctgtatatcaatagtaaaacaggattacaagaaaaggatgtgatgtattaagtttttgtctttactacttgagcatctcgcattgaggtt 2446017  T
Q  119 ctcaactcctttctagtgtacttaatatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2446016 ctcaactcctttctagtgtacttaatatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacaca 2445917  T
Q  219 tatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagtatccctatagtgttccacatccgtgtctatgcccgtgcttca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445916 tatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagtatccctatagtgttccacatccgtgtctatgcccgtgcttca 2445817  T
Q  319 taggtactacttatgtatatgttattgcatttgaatcctcttcatat 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2445816 taggtactacttatgtatatgttattgcatttgaatcctcttcatat 2445770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 3921712 - 3921659
Alignment:
Q  220 atgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    ||||||| |||||||||||||||||||||||||||| |||| |||||| |||||    
T  3921712 atgattacattgaattatgtcattttctcaaattattattgatgttgacgtgtc 3921659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 19637826 - 19637760
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    |||| ||||||||||||||| ||||||| |||||||||||| ||||||| || ||||| || |||||    
T  19637826 gacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtc 19637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 30847727 - 30847769
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  30847727 gacacatatgattacattgaattatgtcattttttcaaattat 30847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 20157285 - 20157420
Alignment:
Q  144 tatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtcttt---gacatcgacacatatgattaaattgaattatgtc 240  Q
    |||||| || ||| ||||||||||||||| ||||| |||| | ||||| ||||| |||||      |||| ||||||||||||||| | ||||||||||     
T  20157285 tatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggacacgacaccgacacatatgattacactgaattatgtg 20157384  T
Q  241 attttctcaaattatcattggtgttgaagtgtcagt 276  Q
    ||||||||| ||||| |  ||||| || ||||||||    
T  20157385 attttctcacattattagcggtgtcgatgtgtcagt 20157420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 22794031 - 22794148
Alignment:
Q  156 acactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||| ||||||| |||||||||  | ||||||||||| |||||   |||| |||||| ||| |||| | || ||||||||||||| |||||||||    
T  22794031 acactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcg--gaca-cgacacctataattacactgtattatgtcattttttcaaattat 22794127  T
Q  256 cattggtgttgaagtgtcagt 276  Q
     ||  ||||||| ||||||||    
T  22794128 tatccgtgttgacgtgtcagt 22794148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 16812674 - 16812587
Alignment:
Q  144 tatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacacatatgattaaattgaat 234  Q
    |||||| || |||||||||||| ||||||||||||||||| | ||| | ||||| |||   |||||||| ||||||||||||  |||||||    
T  16812674 tatgaagcacggacactcctcagattaggcgtgtcccggtttcggataagcgtcggtg---ttgacatcaacacatatgattccattgaat 16812587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 373100 - 373057
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||    
T  373100 cgacacatatgattaaactaaatcatgtcattttctcaaattat 373057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 25361938 - 25361887
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||| |||| | |||||||||| ||||||||||||||||| ||||||    
T  25361938 gacacatataattacactgaattatgtgattttctcaaattatcagtggtgt 25361887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 6427401 - 6427339
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||||||| |||| |||||||||||| ||||||||||||||| |  |||||||  ||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagt 6427339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 40747780 - 40747822
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattat 40747822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 1815375 - 1815326
Alignment:
Q  144 tatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatg 193  Q
    ||||||||| || ||||||||| ||||||||||||||||| | |||||||    
T  1815375 tatgaatcacggtcactcctcagattaggcgtgtcccggtgtcggacatg 1815326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 11571628 - 11571595
Alignment:
Q  222 gattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| ||||||||||||||||||||||||||||    
T  11571628 gattacattgaattatgtcattttctcaaattat 11571595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 14332461 - 14332420
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    ||||| || |||||| ||||||||||||||||||||||||||    
T  14332461 cgacatatgtgattacattgaattatgtcattttctcaaatt 14332420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 40285655 - 40285724
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    ||||||||||||||||| || | |||||||||  ||||||||||||||| |  |||||||  ||||||||    
T  40285655 gacatcgacacatatgactacactgaattatgcgattttctcaaattattagcggtgttggtgtgtcagt 40285724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 609464 - 609516
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||| |||||||||  ||||||||||| ||||||||||||||| | ||||||    
T  609464 cgacatatatgattatgttgaattatgtaattttctcaaattattagtggtgt 609516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 10799712 - 10799668
Alignment:
Q  223 attaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    |||| ||| |||||||| |||||||||||||||||| ||||||||    
T  10799712 attacattaaattatgttattttctcaaattatcatgggtgttga 10799668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 11412774 - 11412826
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||| |||||| | |||||||||||||||||||||| ||||| || |||||    
T  11412774 cgacacctatgatcacattgaattatgtcattttctcatattattatcggtgt 11412826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 31667483 - 31667435
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||| |||||| ||| |||||||||||||||| |||||||    
T  31667483 gacaccgacacatgtgattacatttaattatgtcattttctaaaattat 31667435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 39828323 - 39828263
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    |||| ||||||||| ||| || ||||| ||||||||||||||| |||||||| || |||||    
T  39828323 gacatatatgattagattaaagtatgttattttctcaaattattattggtgtcgacgtgtc 39828263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 42325595 - 42325559
Alignment:
Q  230 tgaattatgtcattttctcaaattatcattggtgttg 266  Q
    |||||||||||||||||||||||||| || |||||||    
T  42325595 tgaattatgtcattttctcaaattattatcggtgttg 42325559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 44296496 - 44296543
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||||||||| |  ||||||||||||||||||||||||    
T  44296496 gacaccgacacatatgattaacta-aattatgtcattttctcaaattat 44296543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 44482288 - 44482240
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| | |||||||||| |||||||||||||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 9024183 - 9024243
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||    
T  9024183 gacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtc 9024243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 10158037 - 10157995
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  10158037 cgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 4864114 - 4864061
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    |||||||| |||||||| |||||||||||||| ||||||||| || ||||||||    
T  4864114 acacatataattaaattaaattatgtcattttttcaaattataataggtgttga 4864061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 6284669 - 6284710
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  6284669 acacatgtgattaaattcaattatgtcattttctcaaattat 6284710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 4859111 - 4859171
Alignment:
Q  204 tttgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||  ||||| | |||||| |||| ||||||||||||||||||||||| ||||||||    
T  4859111 tttgacactgacacgtgtgattacattggattatgtcattttctcaaattattattggtgt 4859171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 9617492 - 9617444
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattat 9617444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 9629441 - 9629393
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattat 9629393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 12236765 - 12236676
Alignment:
Q  156 acactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacacatatgattaaattgaattatgtcattttct 247  Q
    ||||||||||  ||||||||||||||||   | ||||| ||| ||||  || ||||||||||||| ||||| |||||||||||| |||||||    
T  12236765 acactcctcaggttaggcgtgtcccggtgccgaacatgtgtcggtgt--ttaacatcgacacatacgattacattgaattatgttattttct 12236676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 13851794 - 13851678
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagtatccctatagtgttccacatccgtgtctat 306  Q
    ||||||||||||||| |||| | ||||||| || ||||||||||||||| |  ||||| || |||||||| ||| | | |||||| |  ||||||||       
T  13851794 gacatcgacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgttcaatgtccgtgtccga 13851695  T
Q  307 gcccgtgcttcataggt 323  Q
     ||||||||||||||||    
T  13851694 acccgtgcttcataggt 13851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 12086351 - 12086394
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||||| |||||||||||||| |||||||||||    
T  12086351 cgacacctatgattaaactgaattatgtcattatctcaaattat 12086394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 30866150 - 30866193
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||||| |||| |||||||||||| |||||||||||||||    
T  30866150 cgacacatataattacattgaattatgtgattttctcaaattat 30866193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 34446618 - 34446575
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||| | ||||||||||||||||||||||||||    
T  34446618 cgacacctatgattacactgaattatgtcattttctcaaattat 34446575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 7378037 - 7377991
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||||    
T  7378037 gacaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 8931603 - 8931649
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||||    
T  8931603 gacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 10335382 - 10335424
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    |||||||| |||||| ||| |||||||||||||||||||||||    
T  10335382 cgacacatctgattacattcaattatgtcattttctcaaatta 10335424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 15443742 - 15443684
Alignment:
Q  218 atatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||| |||| |||||||||||| ||||||||||||||| |||| ||| || ||||||||    
T  15443742 atataattatattgaattatgttattttctcaaattattattgatgtcgacgtgtcagt 15443684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 26562747 - 26562701
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||||    
T  26562747 gacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 31115540 - 31115486
Alignment:
Q  210 atcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||||||||| | |||||||| ||| |||| |||||||||| ||||||||    
T  31115540 atcgacacatatgatcacattgaattgtgttatttactcaaattattattggtgt 31115486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 7265594 - 7265663
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||| |||||||||| |||| | |||||||||| ||||||||||||||| |  |||||||  ||||||||    
T  7265594 gacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagt 7265663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 13595961 - 13595896
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagtat 278  Q
    ||||||| |||||| |||||||| | |||||| |||||||||  ||||||||||| ||||| ||||    
T  13595961 gacacatgtgattatattgaattgtatcatttgctcaaattaatattggtgttgacgtgtcggtat 13595896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 32981016 - 32980979
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattt 244  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  32981016 gacaccgacacatatgattatattgaattatgtcattt 32980979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 6751883 - 6751927
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaa 251  Q
    |||| |||||| | |||||| ||||||||||||||||||||||||    
T  6751883 gacaccgacacttgtgattacattgaattatgtcattttctcaaa 6751927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 8148178 - 8148130
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| || ||||| ||||| ||| ||||||||||||||||||||||||    
T  8148178 gacattgaaacatacgattacattcaattatgtcattttctcaaattat 8148130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 9025495 - 9025543
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| | |||||||||| |||||||||||||||    
T  9025495 gacaccgacacatataattacactgaattatgtgattttctcaaattat 9025543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 9195755 - 9195803
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| | | ||||||||||||||||||||||||    
T  9195755 gacaccgacacatataattacactaaattatgtcattttctcaaattat 9195803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 19369875 - 19369831
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaa 251  Q
    |||| |||||| | |||||| ||||||||||||||||||||||||    
T  19369875 gacaccgacacttgtgattacattgaattatgtcattttctcaaa 19369831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 14465300 - 14465352
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  14465300 cgacacatatgattaaattgaattatgtcattttctcaaattattatcggtgt 14465352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 264
Target Start/End: Original strand, 18513176 - 18513299
Alignment:
Q  144 tatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatc---gacacatatgattaaattgaattatgtc 240  Q
    |||||| || |||||||||||| ||||||||||||| ||| | |||||  |||| |||||    ||| |   |||||||||||||| |||||||||||||    
T  18513176 tatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacacaacactgacacatatgattacattgaattatgtc 18513275  T
Q  241 attttctcaaattatcattggtgt 264  Q
    ||||||||||||||| || |||||    
T  18513276 attttctcaaattattatcggtgt 18513299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 11110260 - 11110213
Alignment:
Q  208 acatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||    
T  11110260 acatcgacacatatgattacatcgaattatgtcattttctcaaattat 11110213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 33950195 - 33950125
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    ||||| ||||||||||||||| ||| |||||||| ||||||||||||||| |  || ||||||||||||||    
T  33950195 tgacaccgacacatatgattacattaaattatgtgattttctcaaattattagcggcgttgaagtgtcagt 33950125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 2796597 - 2796537
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtca 274  Q
    |||||| |||||||||| |||||  ||||||||||||||||| | ||||||||||||||||    
T  2796597 acacatgtgattaaattcaattaattcattttctcaaattattaatggtgttgaagtgtca 2796537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 40699932 - 40699980
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||    
T  40699932 gacatcgacacatatgattaagctaaattatgtcattttctcaaattat 40699980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 3568851 - 3568898
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  3568851 gacaccgacacatatgatttaattgaactatgtcattttctcaaatta 3568898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 5654590 - 5654640
Alignment:
Q  207 gacatcgacaca--tatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  5654590 gacatcgacacacgtatgattacattgaattatgtcattttctcaaattat 5654640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 25390892 - 25390942
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggt 262  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||| ||||||    
T  25390892 cgacacatatggttatattgaattatgtcattttctaaaattattattggt 25390942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 26276026 - 26276068
Alignment:
Q  223 attaaattgaattatgtcattttctcaaattatcattggtgtt 265  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  26276026 attacattgaattatgtcattttctcaaattatcataggtgtt 26276068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 10546194 - 10546158
Alignment:
Q  219 tatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattat 10546158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 50875210 - 50875250
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  50875210 acacatctgattaaattgaattatgtcattttttcaaatta 50875250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 43300669 - 43300626
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||    
T  43300669 cgacaaatatgattacattgaattatgtaattttctcaaattat 43300626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 56049935 - 56049869
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    ||||| ||||||||||||||| |||||| ||||||| ||||||||||||| || ||||| || |||||    
T  56049935 tgacaccgacacatatgattacattgaactatgtca-tttctcaaattattatcggtgtcgatgtgtc 56049869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 21345533 - 21345599
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgt 272  Q
    ||||| ||||| | ||||||| ||||| |||||| ||||| ||||||||| ||||||||||| ||||    
T  21345533 tgacaccgacataaatgattacattgagttatgttattttttcaaattattattggtgttgacgtgt 21345599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 31243555 - 31243597
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| |||||||| | ||||||||||||||||||||||||||    
T  31243555 gacacctatgattacactgaattatgtcattttctcaaattat 31243597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 36635375 - 36635313
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||||||| |||| | |||||||||| ||||||||||||||| | ||||||||  ||||||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagt 36635313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 683105 - 683064
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  683105 cgacacatgtgattacattcaattatgtcattttctcaaatt 683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 7214522 - 7214583
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    ||||| |||| ||||| |||| ||| |||||||| ||||||||||||||| | |||||||||    
T  7214522 tgacaccgacgcatataattacattaaattatgtgattttctcaaattattagtggtgttga 7214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 20743286 - 20743327
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||| | ||||||||||||||||||||||||||    
T  20743286 acacctatgattacactgaattatgtcattttctcaaattat 20743327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 34200283 - 34200320
Alignment:
Q  218 atatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  34200283 atatgattcaattgaattatgtgattttctcaaattat 34200320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 34589720 - 34589753
Alignment:
Q  220 atgattaaattgaattatgtcattttctcaaatt 253  Q
    ||||||| ||||||||||||||||||||||||||    
T  34589720 atgattacattgaattatgtcattttctcaaatt 34589753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 40224504 - 40224541
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctca 249  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  40224504 cgacacatatgattacattaaattatgtcattttctca 40224541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 43299983 - 43300020
Alignment:
Q  218 atatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  43299983 atatgattacattgaattatgtaattttctcaaattat 43300020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 46180944 - 46180985
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||| | |||||||||| |||||||||||||||    
T  46180944 acacatatgattacactgaattatgttattttctcaaattat 46180985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 55941011 - 55941064
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    ||||||||||||| | | |||||||| ||||||| ||||||| |||||||||||    
T  55941011 acacatatgattatactaaattatgtaattttcttaaattattattggtgttga 55941064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 5225614 - 5225662
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||  |||||||||||||||| |||||||||||    
T  5225614 gacaccgacacatattattgcattgaattatgtcattatctcaaattat 5225662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 8820461 - 8820397
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||||||||||| |  |||||||||||| ||||| ||||||||| || | |||||| ||||||||    
T  8820461 cgacacatatgactccattgaattatgtgattttatcaaattattatcgatgttgacgtgtcagt 8820397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 19262926 - 19262982
Alignment:
Q  208 acatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||| ||||||| |||||| ||| ||||||||||| |||||||||||| | ||||||    
T  19262926 acattgacacatgtgattacattcaattatgtcatcttctcaaattattactggtgt 19262982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 18571024 - 18570970
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    |||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgttga 18570970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 16630847 - 16630794
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttg 266  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| || |||||||    
T  16630847 gacacatgtgattaaattgaattatgtcattttcttaaattattatcggtgttg 16630794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 4229410 - 4229466
Alignment:
Q  208 acatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||||||||||||| | |||||||||||||| ||| ||||||| ||||||||    
T  4229410 acatcgacacatatgattacactgaattatgtcattctcttaaattattattggtgt 4229466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 44605145 - 44605212
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagtatc 279  Q
    |||||||| | |||| |||||||||||| ||||||||||||||| ||||| ||||| |||||| ||||    
T  44605145 cgacacatgtaattacattgaattatgttattttctcaaattattattggcgttgacgtgtcattatc 44605212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 42205841 - 42205895
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttg 266  Q
    |||||||||||||||  || ||||| |||||||||||||||||| ||||||||||    
T  42205841 cgacacatatgattattttcaattaagtcattttctcaaattattattggtgttg 42205895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 45000847 - 45000893
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 10535765 - 10535817
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||| |||||||| | |||||||||||||||||||||||||| || |||||    
T  10535765 cgacacttatgattacactgaattatgtcattttctcaaattattatcggtgt 10535817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 31026753 - 31026705
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| ||||| ||||||||| |||||||||||||||||||| |||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattat 31026705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 19613621 - 19613662
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  19613621 acacatatcattacattgaattatgttattttctcaaattat 19613662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 40682024 - 40681983
Alignment:
Q  223 attaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||| |||||||||||||||||||||||||||| || |||||    
T  40682024 attacattgaattatgtcattttctcaaattattatcggtgt 40681983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 43586006 - 43586075
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||| |||||| | |||||| |||||||||||||||||||||||| | | ||  ||||||| ||||||||    
T  43586006 gacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgttgacgtgtcagt 43586075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 14268739 - 14268803
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||||||||| ||||  || ||||| |||||||||||||||||| |  |||||||| ||||||||    
T  14268739 cgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgttgacgtgtcagt 14268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 18889592 - 18889640
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| ||||||||||||||| | |||||||||| |||||||||| ||||    
T  18889592 gacaccgacacatatgattacactgaattatgtgattttctcaatttat 18889640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 29970550 - 29970598
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||||||||||||||| | |||| ||||  |||||||||||||||    
T  29970550 gacatcgacacatatgattacactgaactatgcgattttctcaaattat 29970598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 37402091 - 37402123
Alignment:
Q  213 gacacatatgattaaattgaattatgtcatttt 245  Q
    |||||||||||||| ||||||||||||||||||    
T  37402091 gacacatatgattacattgaattatgtcatttt 37402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 37411245 - 37411293
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||||| || | | |||||||||| |||||||||||||||    
T  37411245 gacatcgacacatataatcacactgaattatgtgattttctcaaattat 37411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 38134412 - 38134464
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  38134412 cgacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 38134464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 17285116 - 17285062
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  17285116 gacacatgtgattaaattgaattatatcattctctcaaattattattggtgttga 17285062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 2525845 - 2525902
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||| ||||||||||||||| ||||||||||||||||| |||||||||| || |||||    
T  2525845 gacaccgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgt 2525902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 4909203 - 4909152
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||||||||| | |||||||||| ||||||||||||||| ||||||||    
T  4909203 gacacatatgattacaatgaattatgtaattttctcaaattattattggtgt 4909152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 19930945 - 19930990
Alignment:
Q  210 atcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||||||| |||| |||||||||||||||||| |||||||||    
T  19930945 atcgacacatataattacattgaattatgtcattttatcaaattat 19930990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 36314635 - 36314676
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  36314635 acacatatgattacattgaaatatgtcattttctcaaattat 36314676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 44172898 - 44172939
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctcaaattat 44172939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 7133213 - 7133330
Alignment:
Q  144 tatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacaca-----tatgattaaattgaattatg 238  Q
    |||||| || |||| ||||||| |||||| ||||||| || | ||||| ||||| |||||   |||| |||||||     |||||||| | |||||||||    
T  7133213 tatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtcc--gacaccgacacaccacctatgattacactgaattatg 7133310  T
Q  239 tcattttctcaaattatcat 258  Q
    ||||||||||||||||||||    
T  7133311 tcattttctcaaattatcat 7133330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 30013246 - 30013196
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||| |||||| ||||||||| |||||||||||| ||||| ||||||||    
T  30013246 acacatgtgattatattgaattacgtcattttctcatattattattggtgt 30013196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 18678207 - 18678162
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaa 251  Q
    |||||| ||||||  |||||| ||||||||||||||||||||||||    
T  18678207 tgacattgacacacgtgattatattgaattatgtcattttctcaaa 18678162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 21247744 - 21247785
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||    
T  21247744 acacacatgattacattgaattacgtcattttctcaaattat 21247785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 37776034 - 37775993
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    ||||||| |||||| ||| |||||||||||||||||||||||    
T  37776034 gacacatgtgattacatttaattatgtcattttctcaaatta 37775993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 2143862 - 2143898
Alignment:
Q  215 cacatatgattaaattgaattatgtcattttctcaaa 251  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  2143862 cacatgtgattacattgaattatgtcattttctcaaa 2143898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 19206108 - 19206060
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| | |||||||||| |||||||||||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattat 19206060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 23128667 - 23128719
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||||||||| | |||||||| |  |||||||||||||| ||||||||    
T  23128667 cgacacatatgattacactgaattatatggttttctcaaattattattggtgt 23128719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 23930270 - 23930230
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    |||| |||||||| | |||||||||||||||||||||||||    
T  23930270 acacctatgattacactgaattatgtcattttctcaaatta 23930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 24146874 - 24146826
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| |||||||||||| ||||||| |||||||    
T  24146874 gacaccgacacatataattatattgaattatgtgattttctaaaattat 24146826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 36013796 - 36013848
Alignment:
Q  204 tttgacatcgacacatatgattaaattgaattatgtca-ttttctcaaattat 255  Q
    ||||||| |||||| | |||||| |||||||||||||| ||||||||||||||    
T  36013796 tttgacaccgacacgtgtgattacattgaattatgtcatttttctcaaattat 36013848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 37824673 - 37824721
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||  || |||||||||||||||||||||||| |||||||    
T  37824673 gacatcaacacacttgtttaaattgaattatgtcattttctaaaattat 37824721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 48582028 - 48581996
Alignment:
Q  221 tgattaaattgaattatgtcattttctcaaatt 253  Q
    |||| ||||||||||||||||||||||||||||    
T  48582028 tgatcaaattgaattatgtcattttctcaaatt 48581996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 48964077 - 48964105
Alignment:
Q  221 tgattaaattgaattatgtcattttctca 249  Q
    |||||||||||||||||||||||||||||    
T  48964077 tgattaaattgaattatgtcattttctca 48964105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 29198477 - 29198528
Alignment:
Q  204 tttgacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  29198477 tttgacattgacgcatatgattacattgaattatgtcattttctcaaattat 29198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 14227259 - 14227211
Alignment:
Q  228 attgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  14227259 attgaattatgttattttctcaaattattattggtgttgacgtgtcagt 14227211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 37225753 - 37225801
Alignment:
Q  216 acatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  37225753 acatatgattacattgaattatgttattttctcaaattattattggtgt 37225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 3508103 - 3508062
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  3508103 acacatatgattacattgaattatgttattttctcaaattat 3508062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 12985450 - 12985393
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||| ||||| ||||||||| |||||||||||| ||||||||||||||| || |||||    
T  12985450 gacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgt 12985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 40063997 - 40063952
Alignment:
Q  219 tatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||    
T  40063997 tatgattacaatgaattatgtcattttctcaaattattattggtgt 40063952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 10441245 - 10441209
Alignment:
Q  223 attaaattgaattatgtcattttctcaaattatcatt 259  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaattatcatt 10441209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 34201056 - 34201104
Alignment:
Q  216 acatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||| |||| |||||||||||||||||||||||||||| ||| ||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattattagtgt 34201104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 34897143 - 34897095
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||||||    
T  34897143 gacatcgacacatataattacactgaattatgtgattttctcaaattat 34897095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 31236583 - 31236626
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||||| |||| |||||||||||| |||||||||||||||    
T  31236583 cgacacatataattacattgaattatgtgattttctcaaattat 31236626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 7616863 - 7616901
Alignment:
Q  220 atgattaaattgaattatgtcattttctcaaattatcat 258  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  7616863 atgattacattgaattgtgtcattttctcaaattatcat 7616901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 8798838 - 8798880
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||| |||| |||||||||||| |||||||||||||||    
T  8798838 gacacatataattatattgaattatgttattttctcaaattat 8798880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 18646268 - 18646173
Alignment:
Q  167 attaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||| |||||||  ||||||||||||||| |||||   |||| | ||| ||||||||| | ||||| |||||||||| ||||||||| | ||||||    
T  18646268 attaggtgtgtcccattattggacatgcgtcggtgtc--cgacaccaacatatatgattacactgaatcatgtcattttttcaaattattactggtgt 18646173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 31548293 - 31548339
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaat 252  Q
    ||||| |||||||| |||||| |||||||||||||||||| ||||||    
T  31548293 tgacaccgacacatgtgattacattgaattatgtcattttatcaaat 31548339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 9936865 - 9936824
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||| |||||||||| ||||||||| |||||||    
T  9936865 acacatatgattatattgaattatatcattttcttaaattat 9936824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 12606829 - 12606878
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| |||||||||| |||| |||||||||| | |||||||||||||||    
T  12606829 tgacaccgacacatataattacattgaattatatgattttctcaaattat 12606878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 31119146 - 31119101
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaa 251  Q
    |||| ||||||| | |||||| ||||||||||||||||||||||||    
T  31119146 tgacctcgacacttgtgattacattgaattatgtcattttctcaaa 31119101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 2648274 - 2648314
Alignment:
Q  232 aattatgtcattttctcaaattatcattggtgttgaagtgt 272  Q
    |||||||| ||||||||||||||| ||||||||||| ||||    
T  2648274 aattatgttattttctcaaattattattggtgttgacgtgt 2648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 3112362 - 3112402
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    ||||| ||||||||||| ||| |||||||||||||||||||    
T  3112362 acacacatgattaaattcaataatgtcattttctcaaatta 3112402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 16987970 - 16987922
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| |||||||||||||  ||||||||| || |||||||||||||||    
T  16987970 gacattgacacatatgattgcattgaattacgtgattttctcaaattat 16987922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 32444824 - 32444755
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    |||| |||||||| |||||| ||||||||||||||| |||||||||| | | ||||||||| ||||||||    
T  32444824 gacaccgacacatttgattacattgaattatgtcatcttctcaaattgttaatggtgttgacgtgtcagt 32444755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 43208281 - 43208342
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtca 274  Q
    |||| ||||||||| |||||||||||||||||||||||||||  || |||||||| ||||||    
T  43208281 gacagatatgattacattgaattatgtcattttctcaaattactatcggtgttgatgtgtca 43208342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 28296379 - 28296329
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||||| || |||||||||||||||||||||||||||| || |||||    
T  28296379 acacatatgagtacattgaattatgtcattttctcaaattattatcggtgt 28296329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 16199286 - 16199343
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||  ||| ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  16199286 gacatcgatgcatgtgattaaattgaattatgtcattttgtcaaattattatttgtgt 16199343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 28771734 - 28771685
Alignment:
Q  208 acatcgacacatatgattaaattgaattatgtcattttctcaaattatca 257  Q
    |||| |||||||||| | ||||| ||||||||||||||||||||||||||    
T  28771734 acatagacacatatgttaaaattcaattatgtcattttctcaaattatca 28771685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 9489747 - 9489807
Alignment:
Q  204 tttgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||||||||||||||| ||   |||||||||| ||||||||||||| | ||||||||    
T  9489747 tttgacatcgacacatatgactatcatgaattatgttattttctcaaattgttattggtgt 9489807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 38806854 - 38806906
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||||| ||| ||||||| ||||||| |||||||||||| ||||||||    
T  38806854 cgacacatatgcttacattgaatcatgtcatattctcaaattattattggtgt 38806906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 10009885 - 10009842
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctca 249  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||    
T  10009885 tgacaacgacacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 11596469 - 11596504
Alignment:
Q  220 atgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||| ||||||||||||||||||||||||||||    
T  11596469 atgattacattgaattatgtcattttctcaaattat 11596504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 18607103 - 18607146
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||| |||||||||||| |||||||||||||||    
T  18607103 cgacacctatgattacattgaattatgttattttctcaaattat 18607146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 19737488 - 19737531
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||||  |||||||||||| |||||||||||||||    
T  19737488 cgacacatatgattgcattgaattatgtaattttctcaaattat 19737531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 23287356 - 23287407
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||| |||| |||||||||||||||||||  ||||||| ||||||||    
T  23287356 gacacatataattatattgaattatgtcattttcctaaattattattggtgt 23287407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 31264491 - 31264448
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||| | ||||||||||||||||||||||||||    
T  31264491 cgacacttatgattacactgaattatgtcattttctcaaattat 31264448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 37472603 - 37472646
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  37472603 cgacacatatgattatatcgaattatgtcattttctcgaattat 37472646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 38749571 - 38749621
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||| |||| |||||||||||||||||| ||||||||| || |||||    
T  38749571 acacatataattacattgaattatgtcattttttcaaattattatcggtgt 38749621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 39424700 - 39424642
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||| |||| || ||| || ||||||| |||||||||||||||||||| ||||||||    
T  39424700 tgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattattggtgt 39424642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 16881185 - 16881128
Alignment:
Q  216 acatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    ||||||||||| ||| |||||||||||||| ||||||||| || ||| |||| |||||    
T  16881185 acatatgattacattaaattatgtcattttttcaaattattatgggtattgacgtgtc 16881128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 41091258 - 41091303
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaat 252  Q
    ||||||||||||||| |||| | |||||||||| ||||||||||||    
T  41091258 gacatcgacacatataattacactgaattatgtgattttctcaaat 41091303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 2577190 - 2577238
Alignment:
Q  216 acatatgattaaattgaattatgtcattttctcaaattatcattggtgt 264  Q
    ||||||||||| | | |||||||||||||||||||||||| || |||||    
T  2577190 acatatgattacactaaattatgtcattttctcaaattattatcggtgt 2577238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 9449506 - 9449470
Alignment:
Q  228 attgaattatgtcattttctcaaattatcattggtgt 264  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  9449506 attgaattatgtgattttctcaaattattattggtgt 9449470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 10010607 - 10010539
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagtatcc 280  Q
    |||||||| |||||| | |||||||||||||||| ||||| | | ||| ||||||| ||||| ||||||    
T  10010607 cgacacatgtgattacaatgaattatgtcattttttcaaaattttattagtgttgaggtgtccgtatcc 10010539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 17925173 - 17925221
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| |||||||||| |||| |||||||||||| ||||||| |||||||    
T  17925173 gacaccgacacatattattacattgaattatgtgattttcttaaattat 17925221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 18919039 - 18919083
Alignment:
Q  223 attaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    ||||| || |||||||||||||||||||||||| || ||||||||    
T  18919039 attaacttaaattatgtcattttctcaaattattatcggtgttga 18919083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 22423813 - 22423861
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| ||||| |||| |||| |||||||||||| |||||||||||||||    
T  22423813 gacaccgacatatataattatattgaattatgtgattttctcaaattat 22423861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 40212014 - 40211966
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| ||| ||||||||||| |||||||||||| |||||||||| ||||    
T  40212014 gacaccgatacatatgattatattgaattatgtaattttctcaatttat 40211966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 41558661 - 41558701
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    ||||||| | |||| ||||||||||||||||||||||||||    
T  41558661 gacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 41600948 - 41600908
Alignment:
Q  215 cacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||||||||| |||||||| ||| |||||||||||||||    
T  41600948 cacatatgattatattgaattgtgtaattttctcaaattat 41600908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 20691378 - 20691329
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||    
T  20691378 tgacaccgacacatatgattacactgaattatgtcattttctcaaattat 20691329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 40150572 - 40150620
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  40150572 gacaccgacacatatgattacattgaattatatcattttctcaaattat 40150620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 24204983 - 24205090
Alignment:
Q  145 atgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacacatatgattaaattgaattatgtcattt 244  Q
    ||||| || ||||||||||| |||||||||||||| ||| | ||||| ||||| |||||   |||| |||||| ||| |||| | || ||||||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtc--cgaca-cgacacttataattacactgtattatgtcattt 24205079  T
Q  245 tctcaaattat 255  Q
    |||||||||||    
T  24205080 tctcaaattat 24205090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 41319316 - 41319377
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    |||||||||  |||| |||||||||||||||||| ||||||||| |||||||| || |||||    
T  41319316 cgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtc 41319377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 9210826 - 9210874
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| ||||||| |||||  ||||||||||||||||||||||||||||    
T  9210826 gacattgacacatgtgattccattgaattatgtcattttctcaaattat 9210874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 19323456 - 19323496
Alignment:
Q  214 acacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  19323456 acacatgtgattaaattcaattatgtcattttctcaaatta 19323496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 40697859 - 40697907
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||| ||||||||||| ||| |||||||||||||||||||||| |||||    
T  40697859 gacaccgacacatatggttagattgaattatgtcattttctcatattat 40697907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 12704663 - 12704706
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||| |||||||||||||||||| |||||||||    
T  12704663 cgacacctatgattacattgaattatgtcattttttcaaattat 12704706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 13807228 - 13807181
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaatt 253  Q
    ||||| |||||||||| |||| |||||||||||| |||||||||||||    
T  13807228 tgacaccgacacatattattatattgaattatgtgattttctcaaatt 13807181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 52369828 - 52369785
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||| |||||||||||| |||||||||||||||    
T  52369828 cgacacctatgattacattgaattatgtaattttctcaaattat 52369785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 8039259 - 8039213
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatcat 258  Q
    |||||| |||||||| ||||||| ||| |||||||||||||||||||    
T  8039259 cgacacctatgattacattgaatcatgccattttctcaaattatcat 8039213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 20141149 - 20141107
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||    
T  20141149 cgacacatatgattacattcaattatgtcagtttctcaaatta 20141107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 23272000 - 23272042
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||    
T  23272000 cgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 27097065 - 27097107
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||    
T  27097065 cgacatatataattaaattgaattatgtaattttctcaaatta 27097107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 40993276 - 40993374
Alignment:
Q  144 tatgaatcaaggacactcctcaaattaggcgtgtcccggtattggacatgcgtctgtgtctttgacatcgacacatatgattaaattgaattatgtcatt 243  Q
    |||||| || |||||||||||  ||||||||||||||||| | ||||||| ||| |||||   |||| |||||||||| |||| | |||||||||| |||    
T  40993276 tatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtc--cgacaccgacacatataattacactgaattatgtgatt 40993372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 25908846 - 25908887
Alignment:
Q  213 gacacatatgattaaattgaattatgtcattttctcaaatta 254  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  25908846 gacacatacgattatattgaattatgtcattttttcaaatta 25908887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 27513663 - 27513712
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtca-ttttctcaaattat 255  Q
    |||| ||||||||||||||| ||||||| |||||| ||||||||||||||    
T  27513663 gacaccgacacatatgattacattgaataatgtcatttttctcaaattat 27513712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 34409352 - 34409409
Alignment:
Q  216 acatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 273  Q
    |||| |||||| ||||||||||||||||||||| || ||| || |||||||| |||||    
T  34409352 acatgtgattacattgaattatgtcattttctcgaagtattatcggtgttgacgtgtc 34409409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 16192751 - 16192799
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    |||||| |||||||| |||| | |||||||||| |||||||||||||||    
T  16192751 gacatcaacacatataattacactgaattatgttattttctcaaattat 16192799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 35160778 - 35160718
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttga 267  Q
    |||| |||||||||||  || |||||||||||| |||| |||||||||| |||| ||||||    
T  35160778 gacaccgacacatatggctacattgaattatgttatttactcaaattattattgctgttga 35160718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 40017386 - 40017426
Alignment:
Q  223 attaaattgaattatgtcattttctcaaattatcattggtg 263  Q
    |||| |||||||||||||||||||||||||| | |||||||    
T  40017386 attacattgaattatgtcattttctcaaattgttattggtg 40017426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 44427899 - 44427855
Alignment:
Q  207 gacatcgacacatatgattaaattgaattatgtcattttctcaaa 251  Q
    |||| |||||||| |||||| |||| |||||||||||||||||||    
T  44427899 gacaccgacacatgtgattacattggattatgtcattttctcaaa 44427855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 51512189 - 51512233
Alignment:
Q  212 cgacacatatgattaaattgaattatgtcattttctcaaattatc 256  Q
    ||||||||||||||  |||||||||||| ||||| ||||||||||    
T  51512189 cgacacatatgattccattgaattatgtgattttatcaaattatc 51512233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 240021 - 240070
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattat 255  Q
    ||||| ||||||||||||||| |||||||||| | |||||||||||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattat 240070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 90902 - 90832
Alignment:
Q  206 tgacatcgacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtcagt 276  Q
    ||||||||||| |||| |||| | |||||||| | ||||||||||||||| | ||||||||  ||||||||    
T  90902 tgacatcgacatatataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagt 90832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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