View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_18 (Length: 368)
Name: NF0885_low_18
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 20649111 - 20648763
Alignment:
| Q |
1 |
tactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgat |
100 |
Q |
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| T |
20649111 |
tactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgat |
20649012 |
T |
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| Q |
101 |
tcccctattgctttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaa |
200 |
Q |
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||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20649011 |
tcccctattcctttagttggccacgatacaaaagttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaa |
20648912 |
T |
|
| Q |
201 |
ttctaccgaaatttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattga |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||| |||||||| |||||| | |
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| T |
20648911 |
ttctaccgaaatatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttggggtagatgaaattaaacccttcaataggagcatgaa |
20648812 |
T |
|
| Q |
301 |
agttttgtatactgatcatgttcccgagtatactgctcctgatgatgtc |
349 |
Q |
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| T |
20648811 |
agttttgtatactgatcatgttccggagtatactgctcctgatgatgtc |
20648763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 20633012 - 20632667
Alignment:
| Q |
1 |
tactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633012 |
tactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgat |
20632913 |
T |
|
| Q |
101 |
tcccctattgctttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaa |
200 |
Q |
| |
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||||||||| |||| | |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632912 |
tcccctattcctttcgctggccacgatacaa---ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaa |
20632816 |
T |
|
| Q |
201 |
ttctaccgaaatttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattga |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| ||||||||||||||| | |
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| T |
20632815 |
ttctaccgaaatatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttgggggatatgattttaaacacttcaataagagcatgaa |
20632716 |
T |
|
| Q |
301 |
agttttgtatactgatcatgttcccgagtatactgctcctgatgatgtc |
349 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20632715 |
agttttgtatactgatcatgttccggagtatactgctcctgatgatgtc |
20632667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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