View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_19 (Length: 358)
Name: NF0885_low_19
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 3972056 - 3972311
Alignment:
| Q |
13 |
acatcatcatatacgaagaaaataatctctaaattagaacaataaattatgtcaattaaaaattcataaccatagatacataagagtactcacatatttc |
112 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3972056 |
acatcattatataagaagaaaataatctctaaattagaacaataaactatgtcaattaaaaattcataaccatagatacataagagtactcacatatttc |
3972155 |
T |
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| Q |
113 |
ttacgaccatatccctcatcatcatcaccacgcctctcagaaccatagctcggtttctcctcatcatcactccttccatagctagttttcctcccatagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3972156 |
ttacgaccatatccctcatcatcatcaccacgcctctcagaaccatagctcggtttctcctcatcatcactccttccatagctagttttcctcccatagc |
3972255 |
T |
|
| Q |
213 |
ttggcttctcctcgtcatcactccttccatagctaggtttcctctcatactcagtc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3972256 |
ttggcttctcctcgtcatcactccttccatagctaggtttcctctcatactcagtc |
3972311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 3972414 - 3972524
Alignment:
| Q |
155 |
ccatagctcggtttctcctcatcatcactccttccatagctagttttcctcccatagcttggcttctcctcgtcatcactccttccatagctaggtttcc |
254 |
Q |
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|||||||| || |||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
3972414 |
ccatagcttggcttctcctcctcatcactccgtccatagctagttttcctgccatagctcggcttctcctcctcatcactccttccatagctaggcttcc |
3972513 |
T |
|
| Q |
255 |
tctcatactca |
265 |
Q |
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||||||||||| |
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| T |
3972514 |
tctcatactca |
3972524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 3972310 - 3972370
Alignment:
| Q |
201 |
tcctcccatagcttggcttctcctcgtcatcactccttccatagctaggtttcctctcata |
261 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3972310 |
tcctcccatagctcggcttctcctcatcatcactccttccatagctaggtttcctctcata |
3972370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 3972315 - 3972370
Alignment:
| Q |
155 |
ccatagctcggtttctcctcatcatcactccttccatagctagttttcctcccata |
210 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
3972315 |
ccatagctcggcttctcctcatcatcactccttccatagctaggtttcctctcata |
3972370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 3972409 - 3972463
Alignment:
| Q |
201 |
tcctcccatagcttggcttctcctcgtcatcactccttccatagctaggtttcct |
255 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |
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| T |
3972409 |
tcctcccatagcttggcttctcctcctcatcactccgtccatagctagttttcct |
3972463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 3972376 - 3972421
Alignment:
| Q |
201 |
tcctcccatagcttggcttctcctcgtcatcactccttccatagct |
246 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
3972376 |
tcctcccatagcttggcttctcctcctcatcactcctcccatagct |
3972421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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