View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0885_low_20 (Length: 342)

Name: NF0885_low_20
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0885_low_20
NF0885_low_20
[»] chr7 (8 HSPs)
chr7 (30-337)||(45026301-45026607)
chr7 (35-164)||(23283791-23283920)
chr7 (30-72)||(19816267-19816309)
chr7 (30-72)||(24044084-24044126)
chr7 (30-72)||(34853394-34853436)
chr7 (30-72)||(36683505-36683547)
chr7 (30-72)||(42456557-42456599)
chr7 (30-72)||(47814676-47814718)
[»] chr4 (11 HSPs)
chr4 (30-337)||(33757424-33757731)
chr4 (89-161)||(198926-198998)
chr4 (87-162)||(37275148-37275223)
chr4 (30-72)||(199002-199044)
chr4 (30-72)||(12640627-12640669)
chr4 (30-72)||(20075528-20075570)
chr4 (30-72)||(20422134-20422176)
chr4 (30-72)||(36111257-36111299)
chr4 (30-72)||(52869450-52869492)
chr4 (30-72)||(55816491-55816533)
chr4 (87-164)||(37275724-37275801)
[»] chr3 (8 HSPs)
chr3 (87-164)||(37104412-37104489)
chr3 (87-162)||(37104990-37105065)
chr3 (30-72)||(25025805-25025847)
chr3 (30-72)||(38279412-38279454)
chr3 (35-69)||(38280302-38280336)
chr3 (30-72)||(44868659-44868701)
chr3 (30-72)||(55281838-55281880)
chr3 (87-162)||(21811939-21812015)
[»] chr2 (8 HSPs)
chr2 (83-149)||(32472042-32472108)
chr2 (34-72)||(3230135-3230173)
chr2 (30-72)||(6849291-6849333)
chr2 (30-72)||(10883290-10883332)
chr2 (30-72)||(28224429-28224471)
chr2 (30-71)||(16887586-16887627)
chr2 (35-72)||(33847881-33847918)
chr2 (35-72)||(40165881-40165918)
[»] chr1 (3 HSPs)
chr1 (87-164)||(3621981-3622058)
chr1 (30-72)||(42839704-42839746)
chr1 (35-72)||(7782732-7782769)
[»] chr8 (2 HSPs)
chr8 (30-72)||(43591010-43591052)
chr8 (32-68)||(16880563-16880599)
[»] chr5 (1 HSPs)
chr5 (87-164)||(2457703-2457780)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 45026301 - 45026607
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaannnnnnnnnnaacaattagattgaaagggaacactgaatttactataggttgtccac 129  Q
    ||||||||| ||||||||||||||||||||||||||||| |||          ||||||||||||||||| |||||||||||||||||||||||||||||    
T  45026301 gtgtgttcatatgggaaagaccaatcctttcccaccatgagaaagttttttt-aacaattagattgaaagagaacactgaatttactataggttgtccac 45026399  T
Q  130 actatatttttcttgtcactttcttcaacctctcaacgtgtatgcatcttacattattccatgggcattagaaattgattctgctgctccagttgtttgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45026400 actatatttttcttgtcactttcttcaacctctcaacgtgtatggatcttacattattccatgggcattagaaattgattctgctgctccaattgtttgt 45026499  T
Q  230 cacctcataatattatgcagactgtaggcatttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaataaacgccggatct 329  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45026500 caccgcataatattatgcagactgtaagcgtttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaacaaacgccggatct 45026599  T
Q  330 gtgctcct 337  Q
    ||| ||||    
T  45026600 gtgatcct 45026607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 23283920 - 23283791
Alignment:
Q  35 ttcacatgggaaagaccaatcctttcccaccatgggaannnnnnnnnnaacaattagattgaaagggaacactgaatttactataggttgtccacactat 134  Q
    ||||||||||||||   |||||||||||||||||||||          |||| ||||||||| |||||||||||| |||  |||||| |||||| | | |    
T  23283920 ttcacatgggaaaggggaatcctttcccaccatgggaatgtttttttaaacagttagattgatagggaacactgattttgttataggctgtccatattgt 23283821  T
Q  135 atttttcttgtcactttcttcaacctctca 164  Q
    || |||||| ||| | ||||||||||||||    
T  23283820 atctttcttctcattgtcttcaacctctca 23283791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 19816267 - 19816309
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  19816267 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 19816309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 24044126 - 24044084
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  24044126 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 24044084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 34853394 - 34853436
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  34853394 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 34853436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 36683547 - 36683505
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  36683547 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 36683505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 42456599 - 42456557
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  42456599 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 42456557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 47814718 - 47814676
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  47814718 gtgtgttcacatgggaaagcttaatcctttcccaccatgggaa 47814676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 33757424 - 33757731
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaannnnnnnnnnaacaattagattgaaagggaacactgaatttactataggttgtccac 129  Q
    ||||||||| ||||||||| ||||||||||||||| || ||||          |||||||| ||||| |||||||| |||||||||||||||||||||||    
T  33757424 gtgtgttcatatgggaaaggccaatcctttcccactataggaaagttttttttaacaattaaattgagagggaacattgaatttactataggttgtccac 33757523  T
Q  130 actatatttttcttgtcactttcttcaacctctcaacgtgtatgcatcttacattattccatgggcattagaaattgattctgctgctccagttgtttgt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33757524 actatatttttcttgtcactttcttcaacctctcaacgtgtatgcatcttacattattccatgggcattagaaattgattctgctgctccaattgtttgt 33757623  T
Q  230 cacctcataatattatgcagactgtaggcatttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaataaacgccggatct 329  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33757624 caccgcataatattatgcagactgtaggcgtttgttactattaacgtggtcaatattagcttatctttccctcacattatgaaaaacaaacgccggatct 33757723  T
Q  330 gtgctcct 337  Q
    ||| ||||    
T  33757724 gtgatcct 33757731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 198998 - 198926
Alignment:
Q  89 tagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcactttcttcaacctc 161  Q
    ||||| || |||||||| ||| ||||||||| | | |||||||||||| |||||| |||||||||||||||||    
T  198998 tagatggatagggaacattgattttactataagctatccacactatatctttcttctcactttcttcaacctc 198926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 37275148 - 37275223
Alignment:
Q  87 attagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcactttcttcaacctct 162  Q
    |||||||| |||||||||| |||  |||||||||  |||||||||||||| ||| || ||||| || |||||||||    
T  37275148 attagattaaaagggaacattgatcttactatagactgtccacactatatgttttttctcactgtcatcaacctct 37275223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 199002 - 199044
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  199002 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 12640669 - 12640627
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  12640669 gtgtgttcacatgggaaagcttaatcctttcccaccatgggaa 12640627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 20075528 - 20075570
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  20075528 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 20075570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 20422134 - 20422176
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  20422134 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 20422176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 36111299 - 36111257
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  36111299 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 36111257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 52869450 - 52869492
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  52869450 gtgtgttcacatgggaaaggtgaatcctttcccaccatgggaa 52869492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 55816533 - 55816491
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  55816533 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 55816491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 37275801 - 37275724
Alignment:
Q  87 attagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcactttcttcaacctctca 164  Q
    |||||||| |||||||||| ||| ||||  ||||  |||||| ||||||| |||||| ||| | ||||||||||||||    
T  37275801 attagattaaaagggaacattgattttatcatagactgtccatactatatctttcttctcattgtcttcaacctctca 37275724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 37104412 - 37104489
Alignment:
Q  87 attagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcactttcttcaacctctca 164  Q
    |||||||| |||||||||| ||| ||||  |||||||||||||||||||| |||||| ||| | ||||||||||||||    
T  37104412 attagattaaaagggaacattgattttatcataggttgtccacactatatctttcttctcattgtcttcaacctctca 37104489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 37105065 - 37104990
Alignment:
Q  87 attagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcactttcttcaacctct 162  Q
    |||||||| |||||||||| |||  |||||||||  |||||||||||||| ||| || ||||| || |||||||||    
T  37105065 attagattaaaagggaacattgatcttactatagactgtccacactatatgttttttctcactgtcatcaacctct 37104990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 25025847 - 25025805
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  25025847 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 25025805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 38279412 - 38279454
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  38279412 gtgtgttcacatgggaaaggtgaatcctttcccaccatgggaa 38279454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 38280336 - 38280302
Alignment:
Q  35 ttcacatgggaaagaccaatcctttcccaccatgg 69  Q
    |||||||||||||| ||||||||||||||||||||    
T  38280336 ttcacatgggaaaggccaatcctttcccaccatgg 38280302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 44868701 - 44868659
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  44868701 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 44868659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 55281838 - 55281880
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  55281838 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 55281880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 21811939 - 21812015
Alignment:
Q  87 attagattgaaagggaacactgaatttactataggttgtccacactatat-ttttcttgtcactttcttcaacctct 162  Q
    |||||||| |||||||||| |||  |||||||||  |||||||||||||| |||| || ||||| || |||||||||    
T  21811939 attagattaaaagggaacattgatcttactatagactgtccacactatatgtttttttctcactgtcatcaacctct 21812015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 32472108 - 32472042
Alignment:
Q  83 aacaattagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcact 149  Q
    ||||||||||||||||||||||||||| |||| |||| | |||| ||| ||||| |||||| |||||    
T  32472108 aacaattagattgaaagggaacactgattttattataagctgtctacaatatatctttcttctcact 32472042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 3230173 - 3230135
Alignment:
Q  34 gttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  3230173 gttcacatgggaaaggccaatccttttccaccatgggaa 3230135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 6849291 - 6849333
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  6849291 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 6849333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 10883290 - 10883332
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  10883290 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 10883332  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 28224471 - 28224429
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  28224471 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 28224429  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 16887586 - 16887627
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatggga 71  Q
    |||||||||||||||||||   ||||||||||||||||||||    
T  16887586 gtgtgttcacatgggaaaggttaatcctttcccaccatggga 16887627  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 33847881 - 33847918
Alignment:
Q  35 ttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  33847881 ttcacatgggaaaggccaatccttttccaccatgggaa 33847918  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 40165881 - 40165918
Alignment:
Q  35 ttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40165881 ttcacatgggaaagaccaatcattttccaccatgggaa 40165918  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 3621981 - 3622058
Alignment:
Q  87 attagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcactttcttcaacctctca 164  Q
    |||||||| |||||||||| ||| ||||  ||||| |||| ||||||||| |||||| ||| | ||||||||||||||    
T  3621981 attagattaaaagggaacattgattttatcataggctgtctacactatatctttcttctcattgtcttcaacctctca 3622058  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 42839704 - 42839746
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  42839704 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 42839746  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 7782769 - 7782732
Alignment:
Q  35 ttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  7782769 ttcacatgggaaaggccaatcctttcctaccatgggaa 7782732  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 43591010 - 43591052
Alignment:
Q  30 gtgtgttcacatgggaaagaccaatcctttcccaccatgggaa 72  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  43591010 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaa 43591052  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 16880599 - 16880563
Alignment:
Q  32 gtgttcacatgggaaagaccaatcctttcccaccatg 68  Q
    ||||||||||||||||||  |||||||||||||||||    
T  16880599 gtgttcacatgggaaagattaatcctttcccaccatg 16880563  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 2457703 - 2457780
Alignment:
Q  87 attagattgaaagggaacactgaatttactataggttgtccacactatatttttcttgtcactttcttcaacctctca 164  Q
    |||| ||| |||||||||| ||| ||||  ||||| ||||| |||||||| |||||| ||| | ||||||||||||||    
T  2457703 attaaattaaaagggaacattgattttatcataggctgtccgcactatatctttcttctcattgtcttcaacctctca 2457780  T

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