View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_24 (Length: 329)
Name: NF0885_low_24
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 7805995 - 7805672
Alignment:
| Q |
1 |
agaaacatattgctacgctactagtaaaagatgatatgttctgaagacaaagatgat-------------------atgtggctgcaacttctaatgagg |
81 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
7805995 |
agaaacatattgctactctactagtaaaagatgatatgttctgaagacaaaggtgattcgaatacaatattctttcatgtggctgcaacttctaatgagg |
7805896 |
T |
|
| Q |
82 |
aaagtcaaccaaattcattttctagatgatgagaatggagtgatgtgtagatctgctgatgctattaacattgatcaatactactttgcagattttattc |
181 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7805895 |
aaagtcaaccaaattcattttctagatgatgagaatggagtgatgtgtagatctgctgatgctattaacattgctcaatactactttgcagattttattc |
7805796 |
T |
|
| Q |
182 |
caaaagaagcgaagcatagctcgcatgatttggtcgtaaatgcaatgccaccttctataacaaatgatgacaatgaagttttgactgctcgtattcgttt |
281 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7805795 |
caaaagaagcgaagcatagctcgcatgatttggtcgtaaatgcaatgccaccttctataacaaattatgacaatgaagttttgactgctcgtattcgttt |
7805696 |
T |
|
| Q |
282 |
tgatgaattctatagagattgatg |
305 |
Q |
| |
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|||||||||||||| || |||||| |
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| T |
7805695 |
tgatgaattctatacaggttgatg |
7805672 |
T |
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