View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_26 (Length: 326)
Name: NF0885_low_26
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_26 |
 | |
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| [»] scaffold0200 (1 HSPs) |
| | |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 1884756 - 1884451
Alignment:
| Q |
1 |
ccagctaccgctaccactactactactattactattaccgcaattgctcgtttcatcgaatgtgattgatgtttcactaaccaacccttgtagccattta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1884756 |
ccagctaccgctaccactactactactattactattaccgcaattgctcgtttcatcgaatgtgattgatgtttcactaaccaactcttgtagccattta |
1884657 |
T |
|
| Q |
101 |
gttgcataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884656 |
gttgcataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattg |
1884557 |
T |
|
| Q |
201 |
aaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcattattattccatcttggacttgaaatttttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884556 |
aaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcattattattccatcttggacttgaaatttttga |
1884457 |
T |
|
| Q |
301 |
tgatgt |
306 |
Q |
| |
|
|||||| |
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|
| T |
1884456 |
tgatgt |
1884451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 105 - 269
Target Start/End: Original strand, 1266390 - 1266554
Alignment:
| Q |
105 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
204 |
Q |
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|||||||||| |||||||| || |||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||||||| |||||| ||| |||| || |
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| T |
1266390 |
cataatgcatatttgcagcatcatttaattcaaatctcattccctttacattaatggcaataataactctgacaaagtgaccaatcctaagaattggcac |
1266489 |
T |
|
| Q |
205 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
269 |
Q |
| |
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|||||||||| | ||||||| | |||||| |||||||| |||| |||| ||||||||||||||| |
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|
| T |
1266490 |
atcttcaaacaatcaatcagaatgaactaactgattcctgcttgaacttttatctttcatatcat |
1266554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 30729416 - 30729310
Alignment:
| Q |
165 |
taatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
264 |
Q |
| |
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|||| |||||||||||||||||||||| ||| || | ||| |||||| ||||||| |||| |||| ||||||||| ||||||||||||||||| |
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| T |
30729416 |
taataactctaacaaagtgatcaatcctaagaatcggcgcattatcaaacattcaatcagtaggagctagcccattcctactgggacttgtatctttcat |
30729317 |
T |
|
| Q |
265 |
atcatta |
271 |
Q |
| |
|
||||||| |
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|
| T |
30729316 |
atcatta |
30729310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 90 - 264
Target Start/End: Original strand, 37214575 - 37214749
Alignment:
| Q |
90 |
gtagccatttagttgcataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaat |
189 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37214575 |
gtagccatttagttgcataatgcattattccagcaccaatcagttcaaatctcatgccttttaccttaatagcagtaatgactctaacaaagtgatcaat |
37214674 |
T |
|
| Q |
190 |
ccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
264 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| |
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| T |
37214675 |
cctaaggattgaaacatcttcaaaccaccaatcaggaggaactagctgattcctactcgggcttgagtctttcat |
37214749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 269
Target Start/End: Complemental strand, 20569 - 20405
Alignment:
| Q |
105 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
204 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||| ||||| ||||| ||| |||| ||||||||||||||| |||||| ||| |||| || |
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|
| T |
20569 |
cataatgcatatttgcagcatcatttaattcaaatctcattccatttacattaatggcaataataactctaacaaagtgaccaatcctaagaattggcac |
20470 |
T |
|
| Q |
205 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
269 |
Q |
| |
|
|||||||||| | ||||||| | ||||||| |||||||| |||| |||| ||||||||||||||| |
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| T |
20469 |
atcttcaaacaatcaatcagaatgaactagctgattcctgcttgaacttttatctttcatatcat |
20405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 105 - 269
Target Start/End: Complemental strand, 45312 - 45148
Alignment:
| Q |
105 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
204 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||||||| |||||| ||| |||| || |
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|
| T |
45312 |
cataatgcatatttgcagcatcatttaattcaaatctcattccctttacattaatggcaataataactctgacaaagtgaccaatcctaagaattggcac |
45213 |
T |
|
| Q |
205 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
269 |
Q |
| |
|
|||||||||| | ||||||| | |||||| |||||||| |||| |||| ||||||||||||||| |
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|
| T |
45212 |
atcttcaaacaatcaatcagaatgaactaactgattcctgcttgaacttttatctttcatatcat |
45148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 16140559 - 16140458
Alignment:
| Q |
165 |
taatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
264 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || | ||||||||||| |||||||| |||| |||| |||||| || || |||||||||||||| |
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|
| T |
16140559 |
taataactctaacaaagtgatcaatcccaagaatcaatgcatcttcaaacatccaatcagaaggagctagcccattcctgctaggtcttgtatctttcat |
16140460 |
T |
|
| Q |
265 |
at |
266 |
Q |
| |
|
|| |
|
|
| T |
16140459 |
at |
16140458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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