View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_27 (Length: 308)
Name: NF0885_low_27
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 33647232 - 33647442
Alignment:
| Q |
7 |
tgcttgagttttcagccaaagatgatgtaatggcgttcacagctgctgttgaaaaagatgatcatgatgttgatgaagtagggttatggtatggaaggaa |
106 |
Q |
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| T |
33647232 |
tgcttgagttttcagccaaagatgatgtaatggcgttcacagatgcagttgagaaagatgatcataatgttgatgaagtagggttatggtatggaaggaa |
33647331 |
T |
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| Q |
107 |
ggttggatcaaaggaaatgggatatgaagagagggcacctcttatggtaggtgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggt |
206 |
Q |
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| T |
33647332 |
ggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtagctgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggt |
33647431 |
T |
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| Q |
207 |
cgtgatgatgt |
217 |
Q |
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|||| |||||| |
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| T |
33647432 |
cgtgttgatgt |
33647442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 25812051 - 25812262
Alignment:
| Q |
7 |
tgcttgagttttcagccaaagatgatgtaatggcgttcacagctgctgttgaaaaagatgatcatgatgttgatgaagtagggttatggtatggaaggaa |
106 |
Q |
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| T |
25812051 |
tgcttgagttttcagccaaagatgacgtattggcattcacagatgctgttgaaaaaggcgaacatgaagtcgatgaggtaggattatggtatggaagaag |
25812150 |
T |
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| Q |
107 |
ggttggatcaaaggaaatgggatatgaagagagggcacctcttatggtaggtgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggt |
206 |
Q |
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| T |
25812151 |
ggttggatcgaaggatatgggatatgaagagaggacggctcttatggttgctgccttatttggaagcaagggtgtgttgtcttatattctcggaaccagt |
25812250 |
T |
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| Q |
207 |
cgtgatgatgtc |
218 |
Q |
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| T |
25812251 |
cgtgttgatgtc |
25812262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 25817789 - 25817927
Alignment:
| Q |
72 |
gatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagagggcacctcttatggtaggtgctttatatggaa |
171 |
Q |
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||||||||||||||||| || ||||||||||||||| ||||||||||||||||| | |||||||| ||| | ||||||||| | | ||| || | ||||| |
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| T |
25817789 |
gatgttgatgaagtaggattgtggtatggaaggaagattggatcaaaggaaatgagttatgaagaaaggacccctcttatgattgctgccttgtttggaa |
25817888 |
T |
|
| Q |
172 |
gcaagggtgtgttgtcttatattctcggaaccggtcgtg |
210 |
Q |
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| T |
25817889 |
gcaagggtgtgttgtcttatattcttggaaccggtcgtg |
25817927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 30121727 - 30121873
Alignment:
| Q |
71 |
tgatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagagggcacctcttatggtaggtgctttatatgga |
170 |
Q |
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||||||||||| || || || |||||||||||||| ||||| ||||| || | || |||||||||||| ||||||| ||||| | |||| | |||||| |
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| T |
30121727 |
tgatgttgatggggttggtttgtggtatggaaggaacgttggttcaaacaaatttggttatgaagagaggacacctctcatggttgctgctatgtatgga |
30121826 |
T |
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| Q |
171 |
agcaagggtgtgttgtcttatattctcggaaccggtcgtgatgatgt |
217 |
Q |
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|| || ||| | | |||||||||| ||||| ||||| | |||||| |
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| T |
30121827 |
agtttggatgtatcggcttatattcttggaacaggtcgggttgatgt |
30121873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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