View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_3 (Length: 554)
Name: NF0885_low_3
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 22 - 531
Target Start/End: Complemental strand, 37859624 - 37859115
Alignment:
| Q |
22 |
catcatcatcaacaatgaatgtgnnnnnnntgacacaaaatctagctggagtttccttcaagctttaacagaaactaacaaaactgaaaatgcaaatggt |
121 |
Q |
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| T |
37859624 |
catcatcatcaacaatgaatgtgaaaaaaatgacacaaaatctagctggagtttccttcaagctttaacagaaactaacaaaattgaaaatgcaaatggt |
37859525 |
T |
|
| Q |
122 |
aaagtctatgttcatcctactgtgaaacgttcctcatcaatgctaagtgaaaagagcttagaaatgtgcactgaaagccttgggagtgaaactggtagca |
221 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859524 |
aacgtctatgttcatcctactgtgaaacgttcctcatcaatgctaagtgaaaagagcttagaaatgtgcactgaaagccttgggagtgaaactggtagca |
37859425 |
T |
|
| Q |
222 |
atgctggtgaaagtagtgatattgatgtttcattattttcttctgacacaagaaatgatgttaacaataacaacatgaataattgtgtgtctagaagagt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859424 |
atgctggtgaaagtagtgatattgatgtttcattattttcttctgacacaagaaatgatgttaacaataacaacatgaataattgtgtgtctagaagagt |
37859325 |
T |
|
| Q |
322 |
taataaagcttcttgtaactttcctccaccactcacatcaataactgattttggtggtgttcatgttaggcctcatcgcgaaggtggtaggttgatatta |
421 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859324 |
taataaagcttcttgtaactttcctccaccactcacttcaataactgattttggtggtgttcatgttaggcctcatcgcgaaggtggtaggttgatatta |
37859225 |
T |
|
| Q |
422 |
gaagctattgcttctccttctactactccttatttccatgcagaacgtgttgatggtaggcttaggttgagtatttttgagactgtttttgattatgatg |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859224 |
gaagctattgcttctccttctactactccttatttccatgcagaacgtgttgatggtaggcttaggttgagtatttttgagactgtttttgattatgatg |
37859125 |
T |
|
| Q |
522 |
gtgatgatga |
531 |
Q |
| |
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|||||||||| |
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| T |
37859124 |
gtgatgatga |
37859115 |
T |
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