View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_34 (Length: 285)
Name: NF0885_low_34
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 89 - 267
Target Start/End: Complemental strand, 4937991 - 4937813
Alignment:
| Q |
89 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
188 |
Q |
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| T |
4937991 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4937892 |
T |
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| Q |
189 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
267 |
Q |
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| T |
4937891 |
ctatcattatgtgttggctaattgttattttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4937813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 89 - 267
Target Start/End: Complemental strand, 4953700 - 4953522
Alignment:
| Q |
89 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4953700 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4953601 |
T |
|
| Q |
189 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
267 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953600 |
ctatcattatgtgttggctaattgtttttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4953522 |
T |
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