View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0885_low_37 (Length: 273)

Name: NF0885_low_37
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0885_low_37
NF0885_low_37
[»] chr4 (1 HSPs)
chr4 (1-268)||(18551186-18551453)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 18551453 - 18551186
Alignment:
Q  1 attaagaaaatcttccttgggtgtgagggtgaaacccccaagatattctctgaaggtccttataatatgagtttcatgaatacaacacataaagtgtttt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18551453 attaagaaaatcttccttgggtgtgagggtgcaacccccaagatattctctgaaggtccttataatatgagtttcatgaatacaacacataaagtgtttt 18551354  T
Q  101 gatcagcccattccactagtaaccttacttatgtcaagtgttcagacaaaatagaacttaaaaaatcccaactttggtaaaacttttggtatttttgacc 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18551353 gatcagcccattccactagtaaccttacttatgtcaagtggtcagacaaaatagaacttaaaaaatcccaactttggtaaaacttttggtatttttgacc 18551254  T
Q  201 ttatccaattttccagggctggccctaagtatgatgtcaacccgctctttgctgccattcttttctgt 268  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  18551253 ttatccaattttccagggctggccctaagtatgatgtcaacctgctctttcctgccattcatttctgt 18551186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University