View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_38 (Length: 267)
Name: NF0885_low_38
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 3377047 - 3376870
Alignment:
| Q |
1 |
atccaactttggtttgtgtaaatcaatgccatcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagacaaa |
100 |
Q |
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| T |
3377047 |
atccaactttggtttgtgtaaatcaataccatcatcattctccatgaagctagtctttgaaggatcaacatggccattgacattaacatcaaaagagaaa |
3376948 |
T |
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| Q |
101 |
cttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcc |
178 |
Q |
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| T |
3376947 |
cttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgatgatgtcc |
3376870 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 45765413 - 45765487
Alignment:
| Q |
1 |
atccaactttggtttgtgtaaatcaatgccatcatcattctccatgaagctagtctttgaaggatcaacatggcc |
75 |
Q |
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| T |
45765413 |
atccaactttggtttgtgtaaatcaatgtcgtcatcattctccatgaaattaggctttaacggatcaatatggcc |
45765487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 2372487 - 2372397
Alignment:
| Q |
81 |
cattaacatcaaaagacaaacttcttaattgatttggtgattgaaaaggacttgtatcttcaagtccttccattagttcccatgtgttgat |
171 |
Q |
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|||| ||||||||||| || ||| | || ||||| || ||| |||||||||| |||||||||| |||||||||| ||||||||||||||| |
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| T |
2372487 |
cattgacatcaaaagaaaagcttttgaagtgattcggcgatcgaaaaggactaatatcttcaagaccttccattaattcccatgtgttgat |
2372397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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