View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_4 (Length: 531)
Name: NF0885_low_4
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 23 - 447
Target Start/End: Complemental strand, 45516787 - 45516363
Alignment:
| Q |
23 |
atcatcagtcattgagtttatacaagttgtgatttttgttcttccttgttgaagccgccaaagtttcagttatatgatcagtcaaagcctatttttacat |
122 |
Q |
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| T |
45516787 |
atcatcagtcaatgagtttatacaagttgtgatttttgttcttccttgttgaagccgccaaagtttcagttatatgatcagtcaaagcctatttttacat |
45516688 |
T |
|
| Q |
123 |
gtcctcggttcttacccccaactaaactggagaagtgccaggtagaactgcaaaatttagtccatctagccaaccttatatgattctaatggggactaat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45516687 |
gtcctcggttcttacccccaactaaactggagaagtgccaggtagaactgcaaaatttagtccatctagccaaccttatatgattctaatggggactaat |
45516588 |
T |
|
| Q |
223 |
gtgagtgttcaataacatcaactgtaggtggttaattcattggtttcagatggttgctttctaagagagtgcaaggttgaacattctattgtaggaattc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45516587 |
gtgagtgttcaataacatcaactgtaggtggttaattcattggtttcagatggttgctttctaagagagtgcaaggttgaacattctattgtaggaattc |
45516488 |
T |
|
| Q |
323 |
gctcaagactcaattctggagtgcagctaaaggtatactatctatctgctcaacttctcttaaaacgactgacatgaagccatgttatcacatgtacgat |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45516487 |
gctcaagactcaattctggagtgcagctaaaggtatactatctatctgctcaacttctcttaaaacgactgacatgaagccatgttatcacatgtacgat |
45516388 |
T |
|
| Q |
423 |
cactttataggataccatgatgatg |
447 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
45516387 |
cactttataggataccatgatgatg |
45516363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 25349123 - 25348836
Alignment:
| Q |
26 |
atcagtcattgagtttatacaagttgtgattttt-gttcttccttgttgaagccgccaaagtttcagttatatgatcagtcaaagcctatttttacatgt |
124 |
Q |
| |
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|||||||| ||||||||||||| ||| ||||||| |||||| | ||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
25349123 |
atcagtcaatgagtttatacaatttgagattttttgttctttcatgtcgaagccaccaaagtttcagttatatgatcagtcaaaacctatatttacatgt |
25349024 |
T |
|
| Q |
125 |
cctcggttcttacccccaactaaactggagaagtgccaggtagaactgcaaaatttagtccatctagccaaccttatatgattctaatggggactaatgt |
224 |
Q |
| |
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|||| || ||||||||||||||| ||||||||||| | |||||||| ||| ||||||||||| ||| |||| | || |||||||||||||||||||| |
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| T |
25349023 |
cctcaattgttacccccaactaaa-tggagaagtgcaatgtagaacttcaagatttagtccatttagagaaccatttaggattctaatggggactaatga |
25348925 |
T |
|
| Q |
225 |
gagtgttcaataacatcaactgtaggtggttaattcattggtttcagatggttgctttctaagagagtgcaaggttgaacattctattgt |
314 |
Q |
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|||||| |||||||||||| ||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||| |
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| T |
25348924 |
gagtgtgcaataacatcaattgtaggtgg-taattcattgatttcagatggttaatttttaagagagtgcaaggttgaacattccattgt |
25348836 |
T |
|
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