View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0885_low_40 (Length: 259)

Name: NF0885_low_40
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0885_low_40
NF0885_low_40
[»] scaffold0436 (1 HSPs)
scaffold0436 (24-259)||(622-857)
[»] chr2 (3 HSPs)
chr2 (24-259)||(23210532-23210767)
chr2 (24-255)||(23844900-23845131)
chr2 (24-259)||(24431215-24431450)
[»] scaffold0064 (1 HSPs)
scaffold0064 (21-259)||(11932-12170)
[»] chr1 (2 HSPs)
chr1 (24-259)||(32410605-32410840)
chr1 (225-259)||(23723406-23723440)
[»] chr8 (3 HSPs)
chr8 (24-259)||(23450370-23450605)
chr8 (24-259)||(24495483-24495718)
chr8 (199-259)||(34301624-34301684)
[»] chr3 (1 HSPs)
chr3 (24-259)||(12057102-12057337)
[»] chr7 (1 HSPs)
chr7 (24-253)||(16481305-16481534)
[»] scaffold0149 (1 HSPs)
scaffold0149 (24-259)||(36456-36692)
[»] chr4 (4 HSPs)
chr4 (110-259)||(23842511-23842660)
chr4 (24-114)||(23844772-23844862)
chr4 (33-168)||(18322297-18322433)
chr4 (33-168)||(18452513-18452649)


Alignment Details
Target: scaffold0436 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 857 - 622
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
857 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctacgctcattagtatttaaggctattatgtttaacct 758  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |    
757 catcaactacccataaccatctactatattaatccctcttatcatcgtaatttcccttctttaacccattcatatcttgtactttacttcatactttgcc 658  T
224 acatcattaacgtcatttattaccttattcctttac 259  Q
    ||||||||||||||||||||||||||||||| ||||    
657 acatcattaacgtcatttattaccttattcccttac 622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 23210767 - 23210532
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
23210767 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaactttcctaagctcattagtatttaaggctattatgtttaacct 23210668  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
23210667 catcaactacccataaccatctactctattaatcccttttatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgcc 23210568  T
224 acatcattaacgtcatttattaccttattcctttac 259  Q
    ||||||||||| ||||||||||||||||||||||||    
23210567 acatcattaacatcatttattaccttattcctttac 23210532  T

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Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 23844900 - 23845131
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||| |||     
23844900 tcatcaactctttaacattaacgcttatattaactcttattccctacaacctaacaaccttcctaagctcattattatttaaggcgattatgtttcacca 23844999  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
23845000 catcaattacccatagccatctactctattattccctcttatcatcgtattttcacttctttaacccattcatatcttgtaccttacttcatactttgcc 23845099  T
224 acatcattaacgtcatttattaccttattcct 255  Q
    ||||||||||||||||||||||||||||||||    
23845100 acatcattaacgtcatttattaccttattcct 23845131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 24431450 - 24431215
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||    
24431450 tcatcaactccttaacattacctcttatattaactcttattccctacaacctaacaaccttcctaagctcattattatttaaggatattatgtttaacct 24431351  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |    
24431350 catcaattacccataaccatctactctattattccctcttatcatcgtattttcatttctttaacccattcatatcttgtaccttacttcatactttgcc 24431251  T
224 acatcattaacgtcatttattaccttattcctttac 259  Q
    || ||||||||||||||||||||||||||| |||||    
24431250 acgtcattaacgtcatttattaccttattcatttac 24431215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 12170 - 11932
Alignment:
21 acatcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaa 120  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  |||||||| |||||||||| |||||||||||    
12170 acatcatcaactctttaacattaccgcttatattaattcctattccctacaacctaacaaccttcctaagctcattattatttaaggcgattatgtttaa 12071  T
121 cctcatcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatacttt 220  Q
    ||||||||| |||||||| ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
12070 cctcatcaattacccatagccatctactctattattccctcttatgatcgtattttcacttctttaacccattcatatcttgtaccttacttcatacttt 11971  T
221 gtcacatcattaacgtcatttattaccttattcctttac 259  Q
    | |||||||||||||||||||||||||||||||||||||    
11970 gccacatcattaacgtcatttattaccttattcctttac 11932  T

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Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 32410605 - 32410840
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||    
32410605 tcatcaactcttcaacattaccgcttatattaactcttattccctacaacctaacagccttcctaagctcattattatttaaggctattatgtttaacct 32410704  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    |||||| ||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
32410705 catcaattacccataatcatctactctattattccctcctatcatcgtattttcacttctttaacccattcatatcttgtaccttacttcatactttgcc 32410804  T
224 acatcattaacgtcatttattaccttattcctttac 259  Q
    || |||||||||||||||||||||||||||||||||    
32410805 acgtcattaacgtcatttattaccttattcctttac 32410840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 23723406 - 23723440
Alignment:
225 catcattaacgtcatttattaccttattcctttac 259  Q
    |||||||||||||||||||||||||||||||||||    
23723406 catcattaacgtcatttattaccttattcctttac 23723440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 23450370 - 23450605
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||    
23450370 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctaagctcattactatttaaggatattatgtttaacct 23450469  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    |||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |    
23450470 catcaattacctataaccatctactctattattccctcttatcatcgtattttcatttctttaactcattcatatcttgtaccttacttcatactttgcc 23450569  T
224 acatcattaacgtcatttattaccttattcctttac 259  Q
    || ||||||||||||||||||||||||||| |||||    
23450570 acgtcattaacgtcatttattaccttattcatttac 23450605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 24495483 - 24495718
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||| |||||||||||||||    
24495483 tcatcaactctttaacattgccgcttatattaactcttattccctacaacttaacaaccttcctaagctcattattatttaaggatattatgtttaacct 24495582  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |    
24495583 catcaattacccataatcatctactctattattccctcttatcatcgtattttcatttctttaactcattcatatcttgtaccttacttcatactttgcc 24495682  T
224 acatcattaacgtcatttattaccttattcctttac 259  Q
    |  ||||||||||||||||||||||||||| |||||    
24495683 atgtcattaacgtcatttattaccttattcatttac 24495718  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 34301624 - 34301684
Alignment:
199 cttgtaccttacttcatactttgtcacatcattaacgtcatttattaccttattcctttac 259  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| |||||    
34301624 cttgtaccttacttcataatttgccacgtcattaacgtcatttattaacttattcatttac 34301684  T

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Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 12057102 - 12057337
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||    
12057102 tcatcaactctttaacattaccgcttatattaattcttattccctacaacctaacaaccttcctaagctcattattatttaaggcgattatgtttaacct 12057201  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||      
12057202 catcaattacccatagccatctactctattattccctcttatcatcgtattttcacctctttaacccattcatatcttgtaccttacttcatactttgct 12057301  T
224 acatcattaacgtcatttattaccttattcctttac 259  Q
    |||||||||||||||||||| |||||||||||||||    
12057302 acatcattaacgtcatttatcaccttattcctttac 12057337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 16481305 - 16481534
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||    
16481305 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctaagctcattattatttaaggatattatgtttaacct 16481404  T
124 catcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtaccttacttcatactttgtc 223  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |    
16481405 catcaattacccataaccatctactctattattccctcttatcatcgtattttcatttctttaacccattcatatcatgtaccttacttcatactttgcc 16481504  T
224 acatcattaacgtcatttattaccttattc 253  Q
    || ||| |||||||||||||||||||||||    
16481505 acgtcaataacgtcatttattaccttattc 16481534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 36692 - 36456
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattatgtttaacct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||| |||||||||||||||    
36692 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctaaactcattattatttaaggatattatgtttaacct 36593  T
124 catcaactacccataaccatctactctattattccctctcatcatcgta-atttcacttctttaacccattcatatcttgtaccttacttcatactttgt 222  Q
    |||||| ||||||||| |||||||||| ||||||||||| |||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||     
36592 catcaattacccataatcatctactcttttattccctcttatcatcgtatttttcatttctttaactcattcatatcttgtaccttacttcatactttgc 36493  T
223 cacatcattaacgtcatttattaccttattcctttac 259  Q
     || || |||| ||||||||||||||||||| |||||    
36492 gacgtcgttaatgtcatttattaccttattcatttac 36456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 23842660 - 23842511
Alignment:
110 attatgtttaacctcatcaactacccataaccatctactctattattccctctcatcatcgtaatttcacttctttaacccattcatatcttgtacctta 209  Q
    |||||||||||||||||||| ||||  || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||    
23842660 attatgtttaacctcatcaattacctttagccatctactctattattccctcttatcatcgtattttcacttctttaacccattcatattttgcacctta 23842561  T
210 cttcatactttgtcacatcattaacgtcatttattaccttattcctttac 259  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
23842560 cttcatactttgccacatcattaacgtcatttattaccttattcctttac 23842511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 23844862 - 23844772
Alignment:
24 tcatcaactctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagtatttaaggctattat 114  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||| |||||||||| |||||    
23844862 tcatcaactctttagcattaccgcttatattaactcttattccctacaacctaacaacctttctaagttcattattatttaaggcgattat 23844772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 18322433 - 18322297
Alignment:
33 ctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagta-tttaaggctattatgtttaacctcatcaact 131  Q
    ||||||||||| || |||| ||||||||||| || |||||||||||||| |||||  |||||||| || |||| ||| |||||| ||| ||||||||| |    
18322433 ctttaacattatcgtttatcttaactcttatcccttacaacctaacaactttcctaagctcattattattttagggcgattatgcttagcctcatcaatt 18322334  T
132 acccataaccatctactctattattccctctcatcat 168  Q
    |||| || ||| || ||| || |||||| || |||||    
18322333 acccttagccacctgctccatcattcccccttatcat 18322297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 18452513 - 18452649
Alignment:
33 ctttaacattaccgcttatattaactcttattccctacaacctaacaaccttcctgcgctcattagta-tttaaggctattatgtttaacctcatcaact 131  Q
    ||||||||||| || |||| ||||||||||| || |||||||||||||| |||||  |||||||| || |||| ||| |||||| ||| ||||||||| |    
18452513 ctttaacattatcgtttatcttaactcttatcccttacaacctaacaactttcctaagctcattattattttagggcgattatgcttagcctcatcaatt 18452612  T
132 acccataaccatctactctattattccctctcatcat 168  Q
    |||| || ||| || ||| || |||||| || |||||    
18452613 acccttagccacctgctccatcattcccccttatcat 18452649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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