View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_41 (Length: 258)
Name: NF0885_low_41
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 43238605 - 43238744
Alignment:
| Q |
61 |
aaataaaaaattaattaattaagcattatagaagaagacgtttcctcgtttttcagctgtttgtatcttctgacacaccttgattgcattttcattttca |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43238605 |
aaataaaaaattaattaattaagcattatagaagaagacgtttcctcgtttttcagctgtttgtatcttctgacacaccttgattgcattttcattttca |
43238704 |
T |
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| Q |
161 |
ttatatannnnnnnnatagatttctcagctcataaaaccat |
201 |
Q |
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| T |
43238705 |
ttatata-tttttttatagatttctcagctcataaaaccat |
43238744 |
T |
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Back To:
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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 25415771 - 25415846
Alignment:
| Q |
64 |
taaaaaattaattaattaagcattatagaagaagacgtttcctcgtttttcagctgtttgtatcttctgacacacct |
140 |
Q |
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|||| ||||||||| |||| | || ||||||||||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
25415771 |
taaataattaatta-ttaaactttgtagaagaagacgtttcctcgtttttcagctgcttgtgacttcttacacacct |
25415846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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