View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0885_low_6 (Length: 467)
Name: NF0885_low_6
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 117 - 444
Target Start/End: Complemental strand, 5377711 - 5377385
Alignment:
| Q |
117 |
aacaaacacaagagagcaaaaacaaaaactagccgtgagggaagaaagttcctcaagcatcatcccttaggagaggtaccagtccgtcgggaggggtggc |
216 |
Q |
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| T |
5377711 |
aacaaacacaagagggcaaaaacaaaaactagctgtgagggaagaaagttcctcaagcatcatcccttaggagaggtaccagtccgtcgggaggggtggc |
5377612 |
T |
|
| Q |
217 |
atggttagacaaagccgagtccatggaagcttccaacttagcaagaaagttagcgcactgagtaccctcacgaagagtatgcaagatagaagtgtttcct |
316 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5377611 |
atggttagacaaagccgagtccatgggagcttccaacttagcaagaaagttagcgcattgattaccctcacgaagagtatgcaagatagaagtgtttcct |
5377512 |
T |
|
| Q |
317 |
agccgaactagatccttaaacatgatatttcatggcaggcccgttgttaaacatgatagtccatggatccttaatgccttgaattagagtggcataaaca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
5377511 |
agccgaactagatccttaaacatgatatttcatggcaggcccgctg-taaacatgatagtccatggatccttaatgtcttgaattagagtagcataaaca |
5377413 |
T |
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| Q |
417 |
tgttatttcatggcaggcccgttgatga |
444 |
Q |
| |
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|| |||| |||||||||||||||||||| |
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| T |
5377412 |
tgatattgcatggcaggcccgttgatga |
5377385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 5374258 - 5374371
Alignment:
| Q |
6 |
aacattcactgatcaccttaactggttcgatacatcgctaaaatcagtatcagaaacagcagagattctatacacatacaaacacatagctcatggatac |
105 |
Q |
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| T |
5374258 |
aacattcactgatcaccttaactggttcgatacatcgctaaaatcagtatcagaaacagcagagattctatacacatacaaacacatagctcatggatac |
5374357 |
T |
|
| Q |
106 |
tccacaagactaac |
119 |
Q |
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|||||||||||||| |
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| T |
5374358 |
tccacaagactaac |
5374371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 335
Target Start/End: Original strand, 35379004 - 35379199
Alignment:
| Q |
144 |
actagccgtgagggaagaaagttcctcaagcatcatcccttaggagaggtaccagtccgtcgggaggggtggcatggttagacaaagccgagtccatg-- |
241 |
Q |
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||||||| ||||| | |||||||| |||| ||||||||| |||||||| | || |||| |||||||||| ||||||||||||||||||||||||| |
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| T |
35379004 |
actagccacgaggggaaaaagttccccaagaatcatccctaaggagaggcaaaagatcgtcaggaggggtggtatggttagacaaagccgagtccatgca |
35379103 |
T |
|
| Q |
242 |
--gaagcttccaacttagcaagaaagttagcgcactgagtaccctcacgaagagtatgcaagatagaagtgtttcctagccgaactagatccttaa |
335 |
Q |
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|||||| ||||||||||||| |||| ||||| || ||||||| ||||||||||||||||||| |||||| | ||| |||||||||| |||| |
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| T |
35379104 |
tggaagctcccaacttagcaaggaagtcggcgcaacgattaccctcgcgaagagtatgcaagataggagtgttccgaagctgaactagatctttaa |
35379199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 313
Target Start/End: Original strand, 53002935 - 53003093
Alignment:
| Q |
155 |
gggaagaaagttcctcaagcatcatcccttaggagaggtaccagtccgtcgggaggggtggcatggttagacaaagccgagtccatggaagcttccaact |
254 |
Q |
| |
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|||||| ||||||| |||||||||| | ||| |||||| | || ||| || || | || |||||| ||||||| || ||||||| ||||||| |||| | |
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| T |
53002935 |
gggaagtaagttccccaagcatcattctttaagagaggaagcaatccatcaggggtggcggcatgaatagacaaggctgagtccacggaagctcccaatt |
53003034 |
T |
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| Q |
255 |
tagcaagaaagttagcgcactgagtaccctcacgaagagtatgcaagatagaagtgttt |
313 |
Q |
| |
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|| ||||||| || ||||| | | |||||||||||||| ||||| |||| ||||||| |
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| T |
53003035 |
taacaagaaaattggcgcagcggttcccctcacgaagagtgtgcaatataggagtgttt |
53003093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 312
Target Start/End: Original strand, 37486499 - 37486667
Alignment:
| Q |
144 |
actagccgtgagggaagaaagttcctcaagcatcatcccttaggagaggtaccagtccgtcgggaggggtggcatggttagacaaagccgagtccatgga |
243 |
Q |
| |
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||||||| ||||||| |||||||| |||| ||||||||| |||||||| | || | || ||||||||||||||||||||||||||||||| ||||| |
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| T |
37486499 |
actagccacgagggaaaaaagttccccaagaatcatccctaaggagaggcaaaagatcctcaggaggggtggcatggttagacaaagccgagtttatgga |
37486598 |
T |
|
| Q |
244 |
agcttccaacttagcaagaaagttagcgcactgagtaccctcacgaagagtatgcaagatagaagtgtt |
312 |
Q |
| |
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|||| |||||||||||| || | ||||| | | ||||||| ||||||||||||||||||| |||||| |
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| T |
37486599 |
agctctcaacttagcaaggaaatcggcgcatttattaccctcgcgaagagtatgcaagataggagtgtt |
37486667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 37486682 - 37486744
Alignment:
| Q |
382 |
gatccttaatgccttgaattagagtggcataaacatgttatttcatggcaggcccgttgatga |
444 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||| || | |||| | || |||||||||| |
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| T |
37486682 |
gatctttaatgtcttgaattagagtggcataaacatgatactccatgactgggccgttgatga |
37486744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 313
Target Start/End: Complemental strand, 26792726 - 26792569
Alignment:
| Q |
155 |
gggaagaaagttcctcaagcatcatcccttaggagaggtaccagtccgtcgggaggggtggcatggttagacaaagccgagtccatggaagcttccaact |
254 |
Q |
| |
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|||||| ||||||| |||||||||||||||| ||||||| || ||| || |||||||| ||||| ||||||| || |||||| ||||||| |||||| |
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| T |
26792726 |
gggaagtaagttccccaagcatcatcccttaaaagaggtagcaatccatcaggaggggttgcatgaatagacaaggcttagtccacggaagctcccaact |
26792627 |
T |
|
| Q |
255 |
tagcaagaaagttagcgcactgagtaccctcacgaagagtatgcaagatagaagtgttt |
313 |
Q |
| |
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|||||||||| | ||||| ||| |||||||||||||| |||||||||| ||||||| |
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| T |
26792626 |
tagcaagaaaatcggcgca-acagttccctcacgaagagtgtgcaagataggagtgttt |
26792569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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