View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0885_low_7 (Length: 465)

Name: NF0885_low_7
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0885_low_7
NF0885_low_7
[»] scaffold0177 (9 HSPs)
scaffold0177 (11-465)||(21713-22167)
scaffold0177 (1-379)||(21630-22008)
scaffold0177 (246-448)||(22811-23012)
scaffold0177 (78-279)||(22811-23012)
scaffold0177 (270-380)||(21442-21552)
scaffold0177 (1-111)||(22811-22921)
scaffold0177 (104-211)||(21442-21550)
scaffold0177 (1-43)||(21442-21484)
scaffold0177 (415-465)||(22962-23012)
[»] chr2 (3 HSPs)
chr2 (3-455)||(33866221-33866672)
chr2 (11-465)||(33866061-33866514)
chr2 (178-465)||(33866060-33866346)
[»] chr7 (13 HSPs)
chr7 (193-407)||(40589639-40589853)
chr7 (29-238)||(40589639-40589849)
chr7 (366-461)||(40589754-40589849)
chr7 (1-70)||(40589639-40589708)
chr7 (376-445)||(43181223-43181292)
chr7 (376-445)||(43181292-43181361)
chr7 (207-276)||(43181223-43181292)
chr7 (207-276)||(43181292-43181361)
chr7 (376-436)||(43181361-43181421)
chr7 (39-108)||(43181223-43181292)
chr7 (39-108)||(43181292-43181361)
chr7 (39-89)||(43181361-43181411)
chr7 (207-267)||(43181361-43181421)
[»] chr6 (8 HSPs)
chr6 (193-396)||(27901531-27901733)
chr6 (29-227)||(27901531-27901729)
chr6 (261-407)||(19284438-19284584)
chr6 (366-465)||(27901630-27901729)
chr6 (95-238)||(19284438-19284582)
chr6 (2-70)||(19284438-19284506)
chr6 (1-59)||(27901531-27901589)
chr6 (430-465)||(19284549-19284584)
[»] scaffold0320 (4 HSPs)
scaffold0320 (252-437)||(1-199)
scaffold0320 (84-268)||(1-199)
scaffold0320 (24-92)||(123-191)
scaffold0320 (421-465)||(1-45)
[»] scaffold1425 (7 HSPs)
scaffold1425 (252-385)||(1-134)
scaffold1425 (207-319)||(1720-1832)
scaffold1425 (39-151)||(1720-1832)
scaffold1425 (84-213)||(1-131)
scaffold1425 (376-465)||(1720-1809)
scaffold1425 (421-465)||(1-45)
scaffold1425 (1-48)||(87-134)
[»] chr3 (4 HSPs)
chr3 (250-406)||(2941043-2941198)
chr3 (82-237)||(2941043-2941198)
chr3 (1-69)||(2941043-2941111)
chr3 (419-465)||(2941152-2941198)
[»] chr8 (9 HSPs)
chr8 (361-465)||(24632614-24632719)
chr8 (219-302)||(24632608-24632692)
chr8 (82-213)||(22651308-22651439)
chr8 (250-384)||(22651306-22651439)
chr8 (219-452)||(24631932-24632179)
chr8 (234-452)||(24632115-24632345)
chr8 (24-134)||(24632608-24632719)
chr8 (51-303)||(24631911-24632179)
chr8 (419-465)||(22651393-22651439)
[»] scaffold0585 (3 HSPs)
scaffold0585 (312-403)||(1590-1681)
scaffold0585 (1-66)||(1590-1655)
scaffold0585 (144-234)||(1590-1681)
[»] chr1 (6 HSPs)
chr1 (387-452)||(33036756-33036821)
chr1 (387-452)||(33036848-33036913)
chr1 (218-283)||(33036756-33036821)
chr1 (218-283)||(33036848-33036913)
chr1 (50-115)||(33036756-33036821)
chr1 (50-115)||(33036848-33036913)
[»] scaffold0036 (7 HSPs)
scaffold0036 (314-373)||(93246-93305)
scaffold0036 (314-373)||(93305-93364)
scaffold0036 (314-358)||(93364-93408)
scaffold0036 (1-36)||(93270-93305)
scaffold0036 (1-36)||(93329-93364)
scaffold0036 (3-36)||(93213-93246)
scaffold0036 (340-373)||(93213-93246)
[»] chr4 (9 HSPs)
chr4 (31-78)||(15983840-15983887)
chr4 (368-415)||(15983840-15983887)
chr4 (31-78)||(15983907-15983954)
chr4 (368-415)||(15983907-15983954)
chr4 (31-78)||(15983974-15984021)
chr4 (368-415)||(15983974-15984021)
chr4 (200-246)||(15983841-15983887)
chr4 (200-246)||(15983908-15983954)
chr4 (200-246)||(15983975-15984021)


Alignment Details
Target: scaffold0177 (Bit Score: 296; Significance: 1e-166; HSPs: 9)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 22167 - 21713
Alignment:
Q  11 ttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataa 110  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||||  |||||||    
T  22167 ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatgaacctaattaacaagttacttccttaaaataa 22068  T
Q  111 agtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaattta-tcccaccttttttagcttggattcttgccaaatgccaaatatagttc 209  Q
    | ||||||||||||| |||||| ||||||||||||||||||| ||||||||| |   | ||||| | ||||| |||||||||||||||| |||||| |||    
T  22067 aatttaaattaagtttgtctcccaaggaggaacctttggtgaccaaaatttaatatgaacttttatggcttgaattcttgccaaatgcctaatataattc 21968  T
Q  210 attcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggagga 309  Q
    |||| ||  ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21967 attctagtaatgtaatactacttttatgatgattatggaccaaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcgaaaggagga 21868  T
Q  310 acctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatg 409  Q
    |||||||||||| |||||||| ||| | ||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  21867 acctttggtgaccaaaattta-tcctaccttctttggcttggattcttgccaaatgcctaatatagttcattctagttttgtaatactaattttatgatg 21769  T
Q  410 attatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21768 attatggacctaattaagaagttacttccctaaaataaagtttaaattaagttcgt 21713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 22008 - 21630
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttc 100  Q
    ||||| ||| ||| ||||||||||||| ||||||||| ||||||||||  ||||||||||| |||||||||||||||||||| |||||| ||  ||||||    
T  22008 cttttatggcttgaattcttgccaaatgcctaatataattcattctagtaatgtaatactacttttatgatgattatggaccaaattaagaagttacttc 21909  T
Q  101 cccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaatttatcccaccttttttagcttggattcttgccaaatgccaa 200  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||| |    
T  21908 cctaaaataaagtttaaattaagttcgtctcgaaaggaggaacctttggtgaccaaaatttatcctaccttctttggcttggattcttgccaaatgccta 21809  T
Q  201 atatagttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctcc 300  Q
    ||||||||||||| || | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21808 atatagttcattctagttttgtaatactaattttatgatgattatggacctaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcc 21709  T
Q  301 aaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttca 379  Q
     |||||||||||||||||||| |||||||||||||| ||| | ||| ||| ||||||||||||| ||||||||||||||    
T  21708 caaggaggaacctttggtgaccaaaatttaatccgaacttgtatggcttgaattcttgccaaatgcctaatatagttca 21630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 246 - 448
Target Start/End: Complemental strand, 23012 - 22811
Alignment:
Q  246 ggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttg 345  Q
    ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||| | ||||||||    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaattta-tcctaccttttttg 22914  T
Q  346 gtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 445  Q
    | ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22913 gcttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacataattaacaagttacttccctaaaat 22814  T
Q  446 aaa 448  Q
    |||    
T  22813 aaa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 78 - 279
Target Start/End: Complemental strand, 23012 - 22811
Alignment:
Q  78 ggacctaattaacaatgtacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaatttatcccaccttttttag 177  Q
    |||||||||||||||  || || || ||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||| |    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaatttatcctaccttttttgg 22913  T
Q  178 cttggattcttgccaaatgccaaatatagttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaata 277  Q
    |||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  22912 cttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacataattaacaagttacttccctaaaata 22813  T
Q  278 aa 279  Q
    ||    
T  22812 aa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 21552 - 21442
Alignment:
Q  270 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattccta 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||| ||||    
T  21552 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaataccta 21453  T
Q  370 atatagttcat 380  Q
    |||||||||||    
T  21452 atatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22921 - 22811
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttc 100  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  ||||||    
T  22921 cttttttggcttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacataattaacaagttacttc 22822  T
Q  101 cccaaaataaa 111  Q
    || ||||||||    
T  22821 cctaaaataaa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 21550 - 21442
Alignment:
Q  104 aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaattt-atcccaccttttttagcttggattcttgccaaatgccaaat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| | ||||||| ||||||||||||||||||| || |||    
T  21550 aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaatacctaat 21451  T
Q  203 atagttcat 211  Q
    |||||||||    
T  21450 atagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21484 - 21442
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcat 43  Q
    ||||||| | ||||||||||||||||| |||||||||||||||    
T  21484 ctttttttgcttggattcttgccaaatacctaatatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 23012 - 22962
Alignment:
Q  415 ggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    ||||||||||||||| ||| || || ||||| |||||||||||||||||||    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgt 22962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 455
Target Start/End: Original strand, 33866221 - 33866672
Alignment:
Q  3 tttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccc 102  Q
    ||||||| || |||||||||||||| | |  ||||||||||||||  ||||||||||||||| |||||||||||||||||||| ||||||  | ||||||    
T  33866221 tttttggctttgattcttgccaaatgcttgctatagttcattctatttatgtaatactaattctatgatgattatggacctaaataacaagtttcttccc 33866320  T
Q  103 caaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaattt-atcccaccttttttagcttggattcttgccaaatgccaaa 201  Q
     |||||||  ||||||||||||||||||||||||||||||| | |||||| |||||||| |||| ||||||||  |||||||||||||| ||||| |       
T  33866321 taaaataatttttaaattaagttcgtctccaaaggaggaacttctggtgaccaaaattttatcctacctttttg-gcttggattcttgctaaatgtctgc 33866419  T
Q  202 tatagttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctcca 301  Q
    |||||||||||| |  |||||||||||  || |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  33866420 tatagttcattctatttatgtaatactcattgtatgatgattatggacctaattaacaagtttctttcctaaaataaagtttaaattaagttcgtctcca 33866519  T
Q  302 aaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaatt 401  Q
    |||||||||||||||||||| ||||||| |||| | | ||||||| || ||||||| ||||||  ||  ||||||||||||||  ||||||||||| |||    
T  33866520 aaggaggaacctttggtgaccaaaattttatccta-cctttttggcttcgattctttccaaatgtctgctatagttcattctatttatgtaatactcatt 33866618  T
Q  402 ttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaa 455  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33866619 gtatgatgattatggacctaattaacaagtttcttccctaaaataaagtttaaa 33866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 465
Target Start/End: Original strand, 33866061 - 33866514
Alignment:
Q  11 ttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataa 110  Q
    ||||||||||| |||||  ||  ||||||||||||||  ||||||||||| ||| | ||||||||||||||| |||||||||  |  ||| | |||||||    
T  33866061 ttggattcttgtcaaatgtctgctatagttcattctatttatgtaatactcattgtttgatgattatggacccaattaacaagttttttctctaaaataa 33866160  T
Q  111 agtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaattt-atcccaccttttttagcttggattcttgccaaatgccaaatatagttc 209  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||  |||| ||||||||||||||||    ||||||||    
T  33866161 agtacaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaactttttg-gctttgattcttgccaaatgcttgctatagttc 33866259  T
Q  210 attcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggagga 309  Q
    |||| |  |||||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  33866260 attctatttatgtaatactaattctatgatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctccaaaggagga 33866359  T
Q  310 acctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatg 409  Q
    || | ||||||| ||||||| |||| | |||||| || |||||||||||| ||||  ||  ||||||||||||||  ||||||||||| ||| |||||||    
T  33866360 acttctggtgaccaaaattttatcctaccttttt-ggcttggattcttgctaaatgtctgctatagttcattctatttatgtaatactcattgtatgatg 33866458  T
Q  410 attatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  33866459 attatggacctaattaacaagtttctttcctaaaataaagtttaaattaagttcgt 33866514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 178 - 465
Target Start/End: Original strand, 33866060 - 33866346
Alignment:
Q  178 cttggattcttgccaaatgccaaatatagttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaata 277  Q
    |||||||||||| |||||| |   |||||||||||| |  |||||||||||  || | ||||||||||||||| ||||||||||||  ||| ||||||||    
T  33866060 cttggattcttgtcaaatgtctgctatagttcattctatttatgtaatactcattgtttgatgattatggacccaattaacaagttttttctctaaaata 33866159  T
Q  278 aagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagtt 377  Q
    ||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||| | | ||||||| || |||||||||||||| | |  |||||||    
T  33866160 aagtacaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaac-tttttggctttgattcttgccaaatgcttgctatagtt 33866258  T
Q  378 cattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    |||||||  ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||    
T  33866259 cattctatttatgtaatactaattctatgatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgt 33866346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 193 - 407
Target Start/End: Complemental strand, 40589853 - 40589639
Alignment:
Q  193 aatgccaaatatagttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagt 292  Q
    |||||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40589853 aatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagt 40589754  T
Q  293 tcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgta 392  Q
     |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  40589753 acgtctccaaatgaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgta 40589654  T
Q  393 atactaattttatga 407  Q
    |||||||||||||||    
T  40589653 atactaattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 40589849 - 40589639
Alignment:
Q  29 cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataaagtttaaattaagttcgt 128  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||| |||    
T  40589849 cctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagtacgt 40589750  T
Q  129 ctccaaaggaggaacctttggtgagcaaaattt-atcccaccttttttagcttggattcttgccaaatgccaaatatagttcattcaagctatgtaatac 227  Q
    ||||||| |||||||||||||||| |||||||| |||| | ||||||| | |||||||||||||||||||| |||||||||||||  || ||||||||||    
T  40589749 ctccaaatgaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaatac 40589650  T
Q  228 tatttttatga 238  Q
    || ||||||||    
T  40589649 taattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 366 - 461
Target Start/End: Complemental strand, 40589849 - 40589754
Alignment:
Q  366 cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagt 461  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40589849 cctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagt 40589754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40589708 - 40589639
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatga 70  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  40589708 cttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaatactaattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 445
Target Start/End: Original strand, 43181223 - 43181292
Alignment:
Q  376 ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 445  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181223 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 445
Target Start/End: Original strand, 43181292 - 43181361
Alignment:
Q  376 ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 445  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181292 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 43181223 - 43181292
Alignment:
Q  207 ttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaat 276  Q
    ||||||| || ||| |||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181223 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 43181292 - 43181361
Alignment:
Q  207 ttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaat 276  Q
    ||||||| || ||| |||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181292 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 43181361 - 43181421
Alignment:
Q  376 ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttactt 436  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| |||||| |||||||||    
T  43181361 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 43181223 - 43181292
Alignment:
Q  39 ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaat 108  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| |||||| ||  |||||||| |||||    
T  43181223 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 43181292 - 43181361
Alignment:
Q  39 ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaat 108  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| |||||| ||  |||||||| |||||    
T  43181292 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 43181361 - 43181411
Alignment:
Q  39 ttcattctagatatgtaatactaattttatgatgattatggacctaattaa 89  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  43181361 ttcattctagttatataatactaattttatgatgattatagaccaaattaa 43181411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 43181361 - 43181421
Alignment:
Q  207 ttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttactt 267  Q
    ||||||| || ||| |||||||| ||||||||||||||| |||| |||||| |||||||||    
T  43181361 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 193 - 396
Target Start/End: Complemental strand, 27901733 - 27901531
Alignment:
Q  193 aatgccaaatatagttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagt 292  Q
    |||||| |||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27901733 aatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagt 27901634  T
Q  293 tcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgta 392  Q
    ||||||||||||||||||||||| || || ||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  27901633 tcgtctccaaaggaggaacctttcgtaaccaaaattt-atcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgta 27901535  T
Q  393 atac 396  Q
    ||||    
T  27901534 atac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 27901729 - 27901531
Alignment:
Q  29 cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataaagtttaaattaagttcgt 128  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||||||||||||||    
T  27901729 cctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagttcgt 27901630  T
Q  129 ctccaaaggaggaacctttggtgagcaaaatttatcccaccttttttagcttggattcttgccaaatgccaaatatagttcattcaagctatgtaatac 227  Q
    ||||||||||||||||||| || | |||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||| || ||||||||||    
T  27901629 ctccaaaggaggaacctttcgtaaccaaaatttatcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 19284584 - 19284438
Alignment:
Q  261 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgcc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  19284584 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgcc 19284485  T
Q  361 aaattcctaatatagttcattctagatatgtaatactaattttatga 407  Q
    ||||||| | ||||||||||||||| |||||||||||| ||||||||    
T  19284484 aaattccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 366 - 465
Target Start/End: Complemental strand, 27901729 - 27901630
Alignment:
Q  366 cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27901729 cctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagttcgt 27901630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 19284582 - 19284438
Alignment:
Q  95 tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaattt-atcccaccttttttagcttggattcttgccaa 193  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |  |||||| | |||||||||||||||    
T  19284582 tacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgccaa 19284483  T
Q  194 atgccaaatatagttcattcaagctatgtaatactatttttatga 238  Q
    || || | |||||||||||| || |||||||||||||||||||||    
T  19284482 attccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 19284506 - 19284438
Alignment:
Q  2 ttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatga 70  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||    
T  19284506 ttttttggtttggattcttgccaaattccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27901589 - 27901531
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatac 59  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27901589 cttttttggcttggattcttgccaaattcctaatatagttcattctagttatgtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 430 - 465
Target Start/End: Complemental strand, 19284584 - 19284549
Alignment:
Q  430 gttacttccctaaaataaagtttaaattaagttcgt 465  Q
    ||||||||||||||||||||||||||||||||||||    
T  19284584 gttacttccctaaaataaagtttaaattaagttcgt 19284549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 252 - 437
Target Start/End: Original strand, 1 - 199
Alignment:
Q  252 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttgg 351  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  352 attcttgcc-------------aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttc 437  Q
    |||||||||             |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  101 attcttgccaaatgcctaatataaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 1 - 199
Alignment:
Q  84 aattaacaatgtacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaattt-atcccaccttttttagcttgg 182  Q
    |||||||||  |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| | ||||||| | ||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  183 attcttgcc-------------aaatgccaaatatagttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttc 268  Q
    |||||||||             ||||||| ||||||| |||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  101 attcttgccaaatgcctaatataaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 123 - 191
Alignment:
Q  24 aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaa 92  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  123 aaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggacctatttaacaa 191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 1 - 45
Alignment:
Q  421 aattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgt 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 252 - 385
Target Start/End: Original strand, 1 - 134
Alignment:
Q  252 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttgg 351  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  352 attcttgccaaattcctaatatagttcattctag 385  Q
    ||||||||| ||| ||||||||||||||||||||    
T  101 attcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 1720 - 1832
Alignment:
Q  207 ttcattcaagctatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 306  Q
    ||||||| || ||| |||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 1819  T
Q  307 ggaacctttggtg 319  Q
    |||||||||||||    
T  1820 ggaacctttggtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 1720 - 1832
Alignment:
Q  39 ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataaagtttaaattaagttcgtctccaaagga 138  Q
    |||||||||| ||| |||||||||| ||||||||||||| |||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 1819  T
Q  139 ggaacctttggtg 151  Q
    |||||||||||||    
T  1820 ggaacctttggtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 1 - 131
Alignment:
Q  84 aattaacaatgtacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaattt-atcccaccttttttagcttgg 182  Q
    |||||||||  |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||| | ||||||| | ||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  183 attcttgccaaatgccaaatatagttcattc 213  Q
    ||||||||| |||||| ||||||||||||||    
T  101 attcttgcctaatgcctaatatagttcattc 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 376 - 465
Target Start/End: Original strand, 1720 - 1809
Alignment:
Q  376 ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    |||||||||| ||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgt 1809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 1 - 45
Alignment:
Q  421 aattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgt 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 87 - 134
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcattctag 48  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  87 cttttttggtttggattcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 250 - 406
Target Start/End: Complemental strand, 2941198 - 2941043
Alignment:
Q  250 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggttt 349  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||| | ||||||||| ||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaattt-atcctaccttttttggatt 2941100  T
Q  350 ggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatg 406  Q
    |||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||    
T  2941099 ggattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 82 - 237
Target Start/End: Complemental strand, 2941198 - 2941043
Alignment:
Q  82 ctaattaacaatgtacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaatttatcccaccttttttagcttg 181  Q
    |||||||| ||  |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||| | |||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaatttatcctaccttttttggattg 2941099  T
Q  182 gattcttgccaaatgccaaatatagttcattcaagctatgtaatactatttttatg 237  Q
    ||||||| ||||||||| ||||||||||||||  | |||||||||||| |||||||    
T  2941098 gattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2941111 - 2941043
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatg 69  Q
    ||||||||| |||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||    
T  2941111 cttttttggattggattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 2941198 - 2941152
Alignment:
Q  419 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgt 2941152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 361 - 465
Target Start/End: Complemental strand, 24632719 - 24632614
Alignment:
Q  361 aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaa 459  Q
    |||| |||| ||||||||||| ||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  24632719 aaatgcctactatagttcattatattgatgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattga 24632620  T
Q  460 gttcgt 465  Q
    ||||||    
T  24632619 gttcgt 24632614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 24632692 - 24632608
Alignment:
Q  219 atgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctccaa 302  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  24632692 atgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagttcgtctccaa 24632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 22651439 - 22651308
Alignment:
Q  82 ctaattaacaatgtacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgagcaaaatttatcccaccttttttagcttg 181  Q
    |||||||||||  ||||| || ||||||||||||||| ||||||||||| ||||||||||| ||||| ||  |||| |||| || |||||||||||||||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaaccaaccttttttagcttg 22651340  T
Q  182 gattcttgccaaatgccaaatatagttcattc 213  Q
    |||||||||||| |||| | | ||||||||||    
T  22651339 gattcttgccaagtgcctactctagttcattc 22651308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 384
Target Start/End: Complemental strand, 22651439 - 22651306
Alignment:
Q  250 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggttt 349  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| || | ||| ||||| || | ||||||| | ||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaa-ccaaccttttttagctt 22651341  T
Q  350 ggattcttgccaaattcctaatatagttcattcta 384  Q
    ||||||||||||| | |||| | ||||||||||||    
T  22651340 ggattcttgccaagtgcctactctagttcattcta 22651306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 452
Target Start/End: Complemental strand, 24632179 - 24631932
Alignment:
Q  219 atgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctcc---------aaaggagg 308  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||         |||||||     
T  24632179 atgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagtttgtcaccaactagaataaaggagt 24632080  T
Q  309 aacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttat--- 405  Q
    ||| |||| |||| ||||||| |||  | ||||||||| |||||| ||||  ||||   || ||||||||||||||   |||||||| |  ||||||       
T  24632079 aacatttgttgactaaaattttatcttaccttttttggcttggatacttggaaaatgtttattatagttcattctactgatgtaataatcgttttataat 24631980  T
Q  406 -gatgattatggacctaattaacaagttacttccctaaaataaagttt 452  Q
      |||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  24631979 gaatgattctggacataattaagaagttacttcccttaaataaagttt 24631932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 452
Target Start/End: Complemental strand, 24632345 - 24632115
Alignment:
Q  234 tatgatgattatggacctaattaacaagttacttccctaaaataaagtt-taaattaagttcgtctccaaa---------ggaggaacctttggtgacga 323  Q
    |||||| ||||||||| ||||||||| |||||||||||||||| ||||  |||||| |||||||||||||          |||| |||||||| |||| |    
T  24632345 tatgatcattatggacttaattaacatgttacttccctaaaattaagtactaaattgagttcgtctccaactagaataatggagaaacctttgttgacca 24632246  T
Q  324 aaatttaatccgat---cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacct 420  Q
    |||||| | |  ||   ||||||| | || ||| ||||  ||||||| |  |||||||||| ||   |||||||||| ||||||||||||||||||||||    
T  24632245 aaattttaactaattaccttttttagcttagatacttggaaaattcccag-atagttcattttattgatgtaatacttattttatgatgattatggacct 24632147  T
Q  421 aattaacaagttacttccctaaaataaagttt 452  Q
    ||||||||||||||||||||||||||||||||    
T  24632146 aattaacaagttacttccctaaaataaagttt 24632115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 24632719 - 24632608
Alignment:
Q  24 aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataaag-tttaaattaa 122  Q
    |||| |||| ||||||||||| ||   |||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||| |    
T  24632719 aaatgcctactatagttcattatattgatgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattga 24632620  T
Q  123 gttcgtctccaa 134  Q
    ||||||||||||    
T  24632619 gttcgtctccaa 24632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 303
Target Start/End: Complemental strand, 24632179 - 24631911
Alignment:
Q  51 atgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataaag-tttaaattaagttcgtctcc---------aaaggagg 140  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||| |||| ||| ||         |||||||     
T  24632179 atgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagtttgtcaccaactagaataaaggagt 24632080  T
Q  141 aacctttggtgagcaaaa-tttatcccaccttttttagcttggattcttgccaaatgccaaatatagttcattcaagctatgtaatactatttttat--- 236  Q
    ||| |||| |||  |||| ||||||  ||||||||| |||||||| ||||  |||||   | |||||||||||| |   |||||||| |  ||||||       
T  24632079 aacatttgttgactaaaattttatcttaccttttttggcttggatacttggaaaatgtttattatagttcattctactgatgtaataatcgttttataat 24631980  T
Q  237 -gatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctccaaa 303  Q
      |||||| ||||| ||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  24631979 gaatgattctggacataattaagaagttacttcccttaaataaagttttaaattgagttcttctccaaa 24631911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 22651439 - 22651393
Alignment:
Q  419 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgt 465  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgt 22651393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  312 ctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaatttt 403  Q
    |||||||||| |||||||||||| | |||||||||||| |||||||||| ||| |||||||||||||||||||| ||| |||||||||||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1655 - 1590
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaatttt 66  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||| ||| |||||||||||||    
T  1655 cttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  144 ctttggtgagcaaaattta-tcccaccttttttagcttggattcttgccaaatgccaaatatagttcattcaagctatgtaatactattttt 234  Q
    ||||||||| ||||||||| ||| | ||||||| | || |||||||||| |||||| |||||||||||||| || ||| |||||||| ||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 33036756 - 33036821
Alignment:
Q  387 tatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 452  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036756 tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 33036848 - 33036913
Alignment:
Q  387 tatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 452  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036848 tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 33036756 - 33036821
Alignment:
Q  218 tatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 283  Q
    |||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036756 tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 33036848 - 33036913
Alignment:
Q  218 tatgtaatactatttttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 283  Q
    |||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036848 tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 33036756 - 33036821
Alignment:
Q  50 tatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataaagttt 115  Q
    ||||||||||| |||||||||||||||| |||| |||||||||  |||||||| ||||||||||||    
T  33036756 tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 33036848 - 33036913
Alignment:
Q  50 tatgtaatactaattttatgatgattatggacctaattaacaatgtacttccccaaaataaagttt 115  Q
    ||||||||||| |||||||||||||||| |||| |||||||||  |||||||| ||||||||||||    
T  33036848 tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 93246 - 93305
Alignment:
Q  314 ttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatat 373  Q
    |||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  93246 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 93305 - 93364
Alignment:
Q  314 ttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatat 373  Q
    |||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  93305 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93364  T

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Target: scaffold0036; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 93364 - 93408
Alignment:
Q  314 ttggtgacgaaaatttaatccgatcttttttggtttggattcttg 358  Q
    |||||||| |||||||||||| | |||||||||||||||||||||    
T  93364 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 93408  T

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Target: scaffold0036; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 93270 - 93305
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatat 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  93270 cttttttggtttggattcttgtcaaattcctaatat 93305  T

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Target: scaffold0036; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 93329 - 93364
Alignment:
Q  1 cttttttggtttggattcttgccaaattcctaatat 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  93329 cttttttggtttggattcttgtcaaattcctaatat 93364  T

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Target: scaffold0036; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 93213 - 93246
Alignment:
Q  3 tttttggtttggattcttgccaaattcctaatat 36  Q
    ||||||||||||||||||| ||||||||||||||    
T  93213 tttttggtttggattcttgtcaaattcctaatat 93246  T

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Target: scaffold0036; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Original strand, 93213 - 93246
Alignment:
Q  340 tttttggtttggattcttgccaaattcctaatat 373  Q
    ||||||||||||||||||| ||||||||||||||    
T  93213 tttttggtttggattcttgtcaaattcctaatat 93246  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 15983840 - 15983887
Alignment:
Q  31 taatatagttcattctagatatgtaatactaattttatgatgattatg 78  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983840 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983887  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 15983840 - 15983887
Alignment:
Q  368 taatatagttcattctagatatgtaatactaattttatgatgattatg 415  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983840 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983887  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 15983907 - 15983954
Alignment:
Q  31 taatatagttcattctagatatgtaatactaattttatgatgattatg 78  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983907 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983954  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 15983907 - 15983954
Alignment:
Q  368 taatatagttcattctagatatgtaatactaattttatgatgattatg 415  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983907 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 15983974 - 15984021
Alignment:
Q  31 taatatagttcattctagatatgtaatactaattttatgatgattatg 78  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983974 taatattgttcattctagttatgtaatactaattttatgatgattatg 15984021  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 15983974 - 15984021
Alignment:
Q  368 taatatagttcattctagatatgtaatactaattttatgatgattatg 415  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983974 taatattgttcattctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 15983841 - 15983887
Alignment:
Q  200 aatatagttcattcaagctatgtaatactatttttatgatgattatg 246  Q
    ||||| |||||||| || |||||||||||| ||||||||||||||||    
T  15983841 aatattgttcattctagttatgtaatactaattttatgatgattatg 15983887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 15983908 - 15983954
Alignment:
Q  200 aatatagttcattcaagctatgtaatactatttttatgatgattatg 246  Q
    ||||| |||||||| || |||||||||||| ||||||||||||||||    
T  15983908 aatattgttcattctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 15983975 - 15984021
Alignment:
Q  200 aatatagttcattcaagctatgtaatactatttttatgatgattatg 246  Q
    ||||| |||||||| || |||||||||||| ||||||||||||||||    
T  15983975 aatattgttcattctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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